View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1872_low_3 (Length: 417)
Name: NF1872_low_3
Description: NF1872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1872_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 51120123 - 51119969
Alignment:
| Q |
17 |
aataaatatatgatcatgattcatgcatgccggattaaggatttgtagtaacatcactgaaagctaagttttggaccattccatgtgattattctgaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51120123 |
aataaatatatgatcatgattcatgcatgcgggattaaggatttgtagtaacatcactgaaagctaagttttggaccattccatgtgattattctgaaaa |
51120024 |
T |
|
| Q |
117 |
aatttcagcaagcatattatattaggcggctagtaaattacaattacaacccatg |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51120023 |
aatttcagcaagcatattatattaggcggctagtaaattacaattacaacccatg |
51119969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 235 - 406
Target Start/End: Complemental strand, 51119888 - 51119716
Alignment:
| Q |
235 |
aaagttcattttcatgtcttcatcatcgtctttgacaaaccaaaaaacaaaactcagattcattaacaactgaaaacccaaattcaataataccatcaga |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51119888 |
aaagttcattttcatgtcttcatcatcgtctttgacaagccaaaaaacaaaattcagattcattaacaactgaaaacccaaattcaataataccatcaga |
51119789 |
T |
|
| Q |
335 |
ctaaaaga-ttnnnnnnntcaactttcatctcataaaactttaatggcgtctatgtttcagaattatattctt |
406 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
51119788 |
ctaaaagatttaaaaaaatcaactttcatctcataaaactttaatgacgtctatgtttcacaattatattctt |
51119716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University