View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1872_low_6 (Length: 246)
Name: NF1872_low_6
Description: NF1872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1872_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 10117345 - 10117569
Alignment:
| Q |
5 |
atttgatactcattatagtgaattttcacaagagcttttgatggctaatacagaggtattatagattggtgtctaagtcaatatcttcttgtctggttgg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10117345 |
atttgatactcattatagtgaattttcataagagcttttgatggctaatacagaggtattatagattggtgtctaagtcacaatcttcttgtctggttgg |
10117444 |
T |
|
| Q |
105 |
aaacacagcaagtttaaattgcattagcctttgttgttgtggttcttgataaatatgatcgtgagtcccgatcgatggagtccccaaaaactcgtagttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
10117445 |
aaacacagcaagtttaaattgcattagcctttgttgttgtggttcttgataaatatgatcgtgagtcctgatcgatggagtccccataaactcgtagttt |
10117544 |
T |
|
| Q |
205 |
tgaccacaatttaaaaccatgacat |
229 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
10117545 |
tggccacaatttaaaaccatgacat |
10117569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 9484727 - 9484761
Alignment:
| Q |
5 |
atttgatactcattatagtgaattttcacaagagc |
39 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9484727 |
atttgatactcattatagttaattttcacaagagc |
9484761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 10382333 - 10382299
Alignment:
| Q |
5 |
atttgatactcattatagtgaattttcacaagagc |
39 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10382333 |
atttgatactcattatagttaattttcacaagagc |
10382299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University