View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1872_low_9 (Length: 230)
Name: NF1872_low_9
Description: NF1872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1872_low_9 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0087 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 4388956 - 4389113
Alignment:
| Q |
57 |
ggtttctatagtctacaatcattgtaatacagttactataaaccttcataagctctatattagttgtaatgctacactttcatcaattaatgagaattta |
156 |
Q |
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| T |
4388956 |
ggtttctatagtctacaatcattgtaatacagttactataaaccttcataagctctatattagttgtaatgctacactttcatcaattaatgagaattta |
4389055 |
T |
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| Q |
157 |
cttgattcatttcttctctcataatacacattatgagcatgcaatgcaaagccttact |
214 |
Q |
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| T |
4389056 |
cttgattcatttcttctctcataatacacattatgagcatgcaatgcaaagccttact |
4389113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 4388891 - 4388936
Alignment:
| Q |
16 |
agagatgaatgaagattagttacacagataacttgttggacggttt |
61 |
Q |
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| T |
4388891 |
agagaagaatgaagattagttacacagataacttgttggacagttt |
4388936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 14027 - 13933
Alignment:
| Q |
75 |
tcattgtaatacagttactataaaccttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttacttgattcatttc |
169 |
Q |
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| T |
14027 |
tcattgtaatatagctatcatacaccttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttacttcgttcatttc |
13933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 2837 - 2896
Alignment:
| Q |
98 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
157 |
Q |
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| T |
2837 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
2896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 7586 - 7645
Alignment:
| Q |
98 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
157 |
Q |
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| T |
7586 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
7645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 17726 - 17785
Alignment:
| Q |
98 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
157 |
Q |
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| T |
17726 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
17785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 5842684 - 5842743
Alignment:
| Q |
98 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
157 |
Q |
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| T |
5842684 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
5842743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 9606683 - 9606639
Alignment:
| Q |
138 |
atcaattaatgagaatttacttgattcatttcttctctcataata |
182 |
Q |
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| T |
9606683 |
atcaattaatgataatttacttcattcatttcttctttcataata |
9606639 |
T |
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