View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18730_high_2 (Length: 232)
Name: NF18730_high_2
Description: NF18730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18730_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 34646439 - 34646240
Alignment:
| Q |
18 |
aatggaacctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttcaagacaatgtgggttggggttg |
117 |
Q |
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| T |
34646439 |
aatggaacctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttcaagacaatgtgggttggggttg |
34646340 |
T |
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| Q |
118 |
gggacttggcattccaaccattgctatgatgatatcagtaatttcatttgtgttgggctcaccattgtataagactgtgaaacctgaaggaagtcctttg |
217 |
Q |
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| T |
34646339 |
gggacttgggattccaaccattgctatgatgatatcagtaatttcatttgtgttgggctcaccattgtataagactgtgaaacctgaaggaagtcctttg |
34646240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 34666198 - 34666071
Alignment:
| Q |
18 |
aatggaacctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttcaagacaatgtgggttggggttg |
117 |
Q |
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| T |
34666198 |
aatggaacctcttcaattggtactttttttgcatgggatttgcttcattaagtgctttgaccattgtggtttacattcaagatcatatgggatggggttg |
34666099 |
T |
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| Q |
118 |
gggacttggcattccaaccattgctatg |
145 |
Q |
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| T |
34666098 |
gggtcttggtattccaaccattgctatg |
34666071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 34660892 - 34660770
Alignment:
| Q |
18 |
aatggaacctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttcaagacaatgtgggttggggttg |
117 |
Q |
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| T |
34660892 |
aatggaacattttcaattggtattttttcttcatgggtatagcttctttaagtgctttgaccattgttgtttacattcaagacaatactggttggggttg |
34660793 |
T |
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| Q |
118 |
gggacttggcattccaaccattg |
140 |
Q |
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|||| ||||||| ||||| |||| |
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| T |
34660792 |
gggatttggcataccaacaattg |
34660770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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