View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18731_high_6 (Length: 305)
Name: NF18731_high_6
Description: NF18731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18731_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 16085502 - 16085215
Alignment:
| Q |
1 |
aagccatattaaaaagatgcagaatatatgagctacaaatgatatcttcataaagaccaaattgaaacaaaacatgcatccaccaacaacagtaaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16085502 |
aagccatattaaaaagatgcagaatatatgagcttcaaatgatatcttcataaagaccaaattgaaacaaaacatgcatccaccaacaacagtaaaacaa |
16085403 |
T |
|
| Q |
101 |
gcaataaataaaactgaatgaaactaatactaataaagacatttacatagctcccacgatgatccctagcacttaaactactactaccaatgaaacaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16085402 |
gcaataaataaaactgaatgaaactaatactaataaagacatttacatagctcccatgatgatccctagcacttaaactactactaccaatgaaacaaaa |
16085303 |
T |
|
| Q |
201 |
ttaagatttaacagaaatgttatttgaattttattcatcaaccatgtacgggaattgtggtaaaatgcggaatatgtggtcgatattg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16085302 |
ttaagatttaacagaaatgttatttgaattttattcatcaaccatgtacgggaattgtggtaaaatgcggaaaatgtggtcgatattg |
16085215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University