View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18731_high_7 (Length: 305)
Name: NF18731_high_7
Description: NF18731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18731_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 7383067 - 7382781
Alignment:
| Q |
1 |
caaccaatgaatgagaaaacaagtgcatcgagcatgattaagtnnnnnnnnngttaaactagcaaagatatggaagaaggagtatacaaacaaacaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7383067 |
caaccaatgaatgagaaaacaagtgcatcgagcatgatta-gtaaaaaaa--gttaaactagcaaagatatggaagaaggagtatacaaacaaacaaatt |
7382971 |
T |
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| Q |
101 |
aaaatttatttcataagttattcaacaaacttatccaaactttggatgttctcaacttgctccgtgaatagagttgtagtactcctaaaacaagagtagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7382970 |
aaaatttatttcataagttattcaacaaacttatccaaactttggatgttctcaacttgctccgtgaatagagttgtagtactcctaaaacaagagtagt |
7382871 |
T |
|
| Q |
201 |
agcaatgcatatgcatctttgtcgtgagcttcattttacaatataataagattcacatgnnnnnnngttaagggttttatctatataact |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7382870 |
agcaatgcatatgcatctttgtcgtgagcttcattttacgatataataagattcacatgtttttttgttaagggttttatctatataact |
7382781 |
T |
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