View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18731_high_9 (Length: 251)
Name: NF18731_high_9
Description: NF18731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18731_high_9 |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 1355623 - 1355373
Alignment:
| Q |
1 |
atattgattatgagaagaagggaaacacatgatacaaaattactagtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355623 |
atattgattatgagaagaagggaaacacatgatacaaaattactagtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaata |
1355524 |
T |
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| Q |
101 |
aagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1355523 |
aagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattg |
1355424 |
T |
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| Q |
201 |
ccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcct |
251 |
Q |
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| T |
1355423 |
ccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcct |
1355373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 1362465 - 1362259
Alignment:
| Q |
45 |
agtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaac |
144 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1362465 |
agtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaac |
1362366 |
T |
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| Q |
145 |
cttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
244 |
Q |
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| T |
1362365 |
tttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagaccca |
1362266 |
T |
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| Q |
245 |
tcttcct |
251 |
Q |
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||||||| |
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| T |
1362265 |
tcttcct |
1362259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 248
Target Start/End: Complemental strand, 20493182 - 20493047
Alignment:
| Q |
113 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
212 |
Q |
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|||| |||||||| ||||||||||| ||||| ||| |||| ||||| ||||| || || | ||||||||||||||||||| |||||||||||||||| |
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| T |
20493182 |
tattcattgtgaagatcttttgaaccgaaaatctttcccatatctttggcattttttctatagatacttccttcctcatccactattgccaacctcaatg |
20493083 |
T |
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| Q |
213 |
agtgagccacagagtccctagtaaaagacccatctt |
248 |
Q |
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| || | ||||||||||||||| |||||||||| |
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| T |
20493082 |
ttttggctatagagtccctagtaaaggacccatctt |
20493047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 248
Target Start/End: Complemental strand, 11532409 - 11532225
Alignment:
| Q |
64 |
attggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgca |
163 |
Q |
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||||||| |||| |||||||| | ||||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||| ||||| ||| |
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| T |
11532409 |
attggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggca |
11532310 |
T |
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| Q |
164 |
ttgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatctt |
248 |
Q |
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| T |
11532309 |
ttgtttctgtacgtacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctt |
11532225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 251
Target Start/End: Complemental strand, 12847066 - 12846887
Alignment:
| Q |
72 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
171 |
Q |
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||||||||||||| | |||||||||||| || || ||||| |||| ||||||| |||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
12847066 |
gaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctcttttgcattgttcct |
12846967 |
T |
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| Q |
172 |
gaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcct |
251 |
Q |
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| T |
12846966 |
gtaaataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcct |
12846887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 14589470 - 14589371
Alignment:
| Q |
113 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
212 |
Q |
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|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
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| T |
14589470 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14589371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 14623128 - 14623029
Alignment:
| Q |
113 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
212 |
Q |
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|||| |||||||| |||||||||||| | |||||| |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
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| T |
14623128 |
tattcattgtgaagatcttttgaactcacaacctttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14623029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 248
Target Start/End: Complemental strand, 29955088 - 29954912
Alignment:
| Q |
72 |
gaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattgttcct |
171 |
Q |
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|||| |||||||| | |||||||||||| | || | ||| |||| |||||||| ||||||||||||||||||||| ||| ||||| ||||| |||| |
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| T |
29955088 |
gaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttttccatatctttggcattattcc- |
29954990 |
T |
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| Q |
172 |
gaaac-tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatctt |
248 |
Q |
| |
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|| || ||||||||||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||| |
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| T |
29954989 |
gatacatacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatctt |
29954912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 248
Target Start/End: Original strand, 51369360 - 51369541
Alignment:
| Q |
67 |
ggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactcttttgcattg |
166 |
Q |
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|||| |||| |||| ||| | ||||||||| || || || | ||| ||||||||||||| ||||||||||||||||| || |||| ||||| ||||| |
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| T |
51369360 |
ggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaatttttcccatatctttagcattt |
51369459 |
T |
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| Q |
167 |
ttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatctt |
248 |
Q |
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|||||| | | || |||||||||||||| ||| |||||||||||| | || ||||||||||||||||| |||||||||| |
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| T |
51369460 |
ttcctgcacgtgctaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatctt |
51369541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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