View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18731_low_10 (Length: 244)
Name: NF18731_low_10
Description: NF18731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18731_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 50642073 - 50642233
Alignment:
| Q |
1 |
agatttacatggttacattgaatattcaggccaacaaaagaatgcctaataaacattgtggcacaattaatgaatag---actacatcaacaaaaatgat |
97 |
Q |
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| T |
50642073 |
agatttacatggttacattgaatattcaggccaacaaaagaatgcctaataaacattgtgacaccattaatgaatagactactacatcaacaaaaatgat |
50642172 |
T |
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| Q |
98 |
atgatgcatnnnnnnnnnttggaggaccnnnnnnnttgactttaaatataggagaaccaaa |
158 |
Q |
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| T |
50642173 |
atgatgcataaaaataaattggaggaccaaaaaaattgactttaaatataggagaaccaaa |
50642233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 50642290 - 50642343
Alignment:
| Q |
176 |
cgaggaacaaaagtacatttaaaccattattttatcatatatttcctccaatat |
229 |
Q |
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| T |
50642290 |
cgaggaacaaaagtacatttaaaccattatgttatcatatatttcctccaatat |
50642343 |
T |
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