View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18731_low_2 (Length: 678)
Name: NF18731_low_2
Description: NF18731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18731_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 49 - 667
Target Start/End: Original strand, 8775448 - 8776066
Alignment:
| Q |
49 |
gcagatgaagataatgtaaacaatttgagtgcaaataccggtgaagatgatgatgaaatgggtgaagatcatggaaatacggctgctttaattgataaaa |
148 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775448 |
gcagatgaagataatgtgaacaatttgagtgcaaataccggtgaagatgatgatgaaatgggtgaagatcatggaaatacggctgctttaattgataaaa |
8775547 |
T |
|
| Q |
149 |
acgatcatactatagatgatgaggctgatgaagattatgcagaatttttgagtacatatactggtgaagaggttgatgaaacggatgaagattatggaaa |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775548 |
acgatcatactatagatgatgaggctgatgaagattatgcagaatttttgagtacatatactggtgaagaggttgatgaaacggatgaagattatggaaa |
8775647 |
T |
|
| Q |
249 |
tacggatgctttaattgataaaaataatcagactatagatgatgatgcagatgaagattatatgaaatttttgagtggatatatcagtgaagacgatgat |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8775648 |
tacggatgctttaattgataaaaataatcagactatagatgatgatgcagatgaggattatatgaaatttttgagtggatataccagtgaagacgatgat |
8775747 |
T |
|
| Q |
349 |
gaaacggatgaagattatcgatcctttttgactacatatgatcctgatattctaactgattgttctagtaatcacagtggaggttcaaatggcaacaaca |
448 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8775748 |
gaaacggatgaagattatcgatcctttttgactacatatgatcctgatattctaactgattgttctagtaatcacaatggaggttcaaatggcaacaaca |
8775847 |
T |
|
| Q |
449 |
gtggcagtgatgaaacggatgcagattacgcagcctttttgcctacatataatcccgatgatagtggaattgattgtgctagtaatcacagtggttcaaa |
548 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775848 |
gtggcagtgatgaaacggatgcagattacgcagcctttttgcctacatataatcctgatgatagtggaattgattgtgctagtaatcacagtggttcaaa |
8775947 |
T |
|
| Q |
549 |
tattgacgtcaactttgacgacaacactggcagggaggatgtaggagaaggttgcagttattttccgaatcaatctgtttctgatcatattagtgatggt |
648 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775948 |
tattgacgtcaactttgacgacaacactggcagggaggatgtaggagaaggttgcagttattttccgaatcaatctgtttctgatcatattagtgatggt |
8776047 |
T |
|
| Q |
649 |
gttggtgtagatgatgatg |
667 |
Q |
| |
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|||||||||||||| |||| |
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| T |
8776048 |
gttggtgtagatgaagatg |
8776066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 4 - 366
Target Start/End: Original strand, 8775277 - 8775642
Alignment:
| Q |
4 |
atggctgctttaaatgctaaaaatgaccatacgatagatcttgatgcagatgaagataatgtaaacaatttgagtgcaaataccggtgaagatgatgatg |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775277 |
atggctgctttaaatgctaaaaatgaccatacgatagatcttgatgcagatgaagataatgtaaacaatttgagtgcaaataccggtgaagatgatgata |
8775376 |
T |
|
| Q |
104 |
aaatgggtgaagatcatggaaatacggctgctttaattgataaaaacgatcatactataga---tgatgaggctgatgaagattatgcagaatttttgag |
200 |
Q |
| |
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|||||| ||||||||||||||||| ||| ||||||||||||||||| |||||| ||||| ||||| || ||||||||| ||| | |||||| |
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| T |
8775377 |
aaatggatgaagatcatggaaatatggccgctttaattgataaaaatgatcatgtgatagagtgtgatgcagcagatgaagataatgtgaacaatttgag |
8775476 |
T |
|
| Q |
201 |
tacatatactggtgaagaggttgatgaaacggatgaagattatggaaatacggatgctttaattgataaaaataatcagactatagatgatgatgcagat |
300 |
Q |
| |
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| || |||| |||||||| | |||||||| || ||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||| || ||| |
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| T |
8775477 |
tgcaaataccggtgaagatgatgatgaaatgggtgaagatcatggaaatacggctgctttaattgataaaaacgatcatactatagatgatgaggctgat |
8775576 |
T |
|
| Q |
301 |
gaagattatatgaaatttttgagtggatatatcagtgaagacgatgatgaaacggatgaagattat |
366 |
Q |
| |
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||||||||| ||||||||||| ||||| ||||||| | |||||||||||||||||||||| |
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|
| T |
8775577 |
gaagattatgcagaatttttgagtacatatactggtgaagaggttgatgaaacggatgaagattat |
8775642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 8775528 - 8775765
Alignment:
| Q |
6 |
ggctgctttaaatgctaaaaatgaccatacgatagatcttgatgcagatgaagataatgtaaacaatttgagtgcaaataccggtgaagatgatgatgaa |
105 |
Q |
| |
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||||||||||| || |||||| || ||||| |||||| ||| || ||||||||| ||| | | ||||||| || |||| |||||||| | ||||||| |
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| T |
8775528 |
ggctgctttaattgataaaaacgatcatactatagatgatgaggctgatgaagattatgcagaatttttgagtacatatactggtgaagaggttgatgaa |
8775627 |
T |
|
| Q |
106 |
atgggtgaagatcatggaaatacggctgctttaattgataaaaacgatcatactatagatgatgaggctgatgaagattatgcagaatttttgagtacat |
205 |
Q |
| |
|
| || ||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||| || ||||| |||||| ||||||||||| || |
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| T |
8775628 |
acggatgaagattatggaaatacggatgctttaattgataaaaataatcagactatagatgatgatgcagatgaggattatatgaaatttttgagtggat |
8775727 |
T |
|
| Q |
206 |
atactggtgaagaggttgatgaaacggatgaagattat |
243 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||| |
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| T |
8775728 |
ataccagtgaagacgatgatgaaacggatgaagattat |
8775765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 123 - 363
Target Start/End: Original strand, 8775273 - 8775516
Alignment:
| Q |
123 |
aaatacggctgctttaattgataaaaacgatcatactatagatgatgaggctgatgaagattatgcagaatttttgagtacatatactggtgaagaggtt |
222 |
Q |
| |
|
||||| ||||||||||| || |||||| || ||||| |||||| ||| || ||||||||| ||| | | ||||||| || |||| |||||||| | | |
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| T |
8775273 |
aaatatggctgctttaaatgctaaaaatgaccatacgatagatcttgatgcagatgaagataatgtaaacaatttgagtgcaaataccggtgaagatgat |
8775372 |
T |
|
| Q |
223 |
gatgaaacggatgaagattatggaaatacggatgctttaattgataaaaataatcagactataga---tgatgatgcagatgaagattatatgaaatttt |
319 |
Q |
| |
|
||| ||| |||||||||| ||||||||| || |||||||||||||||||| |||| ||||| ||||| |||||||||||| || |||| || |
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| T |
8775373 |
gataaaatggatgaagatcatggaaatatggccgctttaattgataaaaatgatcatgtgatagagtgtgatgcagcagatgaagataatgtgaacaatt |
8775472 |
T |
|
| Q |
320 |
tgagtggatatatcagtgaagacgatgatgaaacggatgaagat |
363 |
Q |
| |
|
|||||| | ||| | ||||||| |||||||||| || ||||||| |
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|
| T |
8775473 |
tgagtgcaaataccggtgaagatgatgatgaaatgggtgaagat |
8775516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 369 - 543
Target Start/End: Complemental strand, 2541830 - 2541659
Alignment:
| Q |
369 |
atcctttttgactacatatgatcctgatattctaactgattgttctagtaatcacagtggaggttcaaatggcaacaacagtggcagtgatgaaacggat |
468 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||| |||| | |||||||| ||| | ||||||||||||||||||| || ||||||||||| ||| |
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| T |
2541830 |
atcctttttgtgtacacatgatcctgatattgaaactggttgtgcaagtaatcagagtagtggttcaaatggcaacaacaatgacagtgatgaaatggac |
2541731 |
T |
|
| Q |
469 |
gcagattacgcagcctttttgcctacatataatcccgatgatagtggaattgattgtgctagtaatcacagtggt |
543 |
Q |
| |
|
|||||||| ||| ||| | || || | | ||||| |||||||| || |||||||||||||||||| |||||| |
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|
| T |
2541730 |
gcagattatgcatcctatctggctgcttgtaatc---ttgatagtgaaactgattgtgctagtaatcatagtggt |
2541659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 529
Target Start/End: Complemental strand, 2542206 - 2542111
Alignment:
| Q |
431 |
gttcaaatggcaacaacagtggcagtgatgaaacggatgcagattacgcagcctttttgcctacatataatcccgatgatagtggaattgattgtgcta |
529 |
Q |
| |
|
|||||||||||||||||| || || |||||||| |||||||||||| || |||||||| |||| ||||||| |||||| || || ||||||||||| |
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|
| T |
2542206 |
gttcaaatggcaacaacaatgacattgatgaaatcgatgcagattacacatcctttttggctacttataatc---atgatattgaaactgattgtgcta |
2542111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 543
Target Start/End: Complemental strand, 2542073 - 2541986
Alignment:
| Q |
453 |
cagtgatgaaacggatgcagattacgcagcctttttgcctacatataatcccgatgatagtggaattgattgtgctagtaatcacagtggt |
543 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||| |||| |||| ||||||| |||||| || || |||||||||||||||||| |||||| |
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|
| T |
2542073 |
cagtgatgaagtggattcagattacgcatcctatttggctacttataatc---atgatattgaaactgattgtgctagtaatcatagtggt |
2541986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 2542271 - 2542213
Alignment:
| Q |
348 |
tgaaacggatgaagattatcgatcctttttgactacatatgatcctgatattctaactg |
406 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| |
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|
| T |
2542271 |
tgaaatggatgaagattgcggatcctttttgcctacacatgatcctgatattcaaactg |
2542213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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