View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18731_low_3 (Length: 493)
Name: NF18731_low_3
Description: NF18731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18731_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Original strand, 29686346 - 29686808
Alignment:
| Q |
13 |
tcatcaatcaaaggtaatattttcttatggttcaattcttggacgacacatttgactgttgctttgtctgaatgcatcgtttctattagttgttgatctt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29686346 |
tcatcaatcaaaggtaatattttcttatggttcaattcttagacgacacatttgactgttgctttgtctgaatgcatcgtttctattagttgttgatctt |
29686445 |
T |
|
| Q |
113 |
tgttatagtgctaagctttgcgttaaagatattcactttctagcagttgtttaggttgtgttctattgacaatgaacttattttcttttctttgaaaaaa |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29686446 |
tgttatagtgctaagctttgcgttaaagatattcactttctagcagttgtttaggttgtgttctattgacaatgaacttattttcttttctttgaaaaaa |
29686545 |
T |
|
| Q |
213 |
cattattgcttgaattggtttaaatttagtagagttgaagttctctaattgagtaattgaatgattattttaggaatcccaatagatttaatgattaaac |
312 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29686546 |
cattatagcttgaattggtttaaatttagtagagttgaagttctctaattgagtaattgaatgataattttaggaatcccaatagatttaatgattaaac |
29686645 |
T |
|
| Q |
313 |
tatgtctattacctttgaatactatattcgattctaaattgatgattaaactgattgggctgtttggggactgtttttggatgaattttgacatgtttaa |
412 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29686646 |
tatgtctattacctttgaatactatattagattctaaattgatgattaaactgattgggctgtttggggactgtttttggatgaattttgacatgtttaa |
29686745 |
T |
|
| Q |
413 |
tgctggaaaattgggtcaaatctgcagaattgtagatggccttgctgtttgcgaggcaattat |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29686746 |
tgctggaaaattgggtcaaatctgcagaattgtagatggccttgctgtttgtgaggcaattat |
29686808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Original strand, 25720349 - 25720811
Alignment:
| Q |
13 |
tcatcaatcaaaggtaatattttcttatggttcaattcttggacgacacatttgactgttgctttgtctgaatgcatcgtttctattagttgttgatctt |
112 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25720349 |
tcattaatcaaaggtaatattgtcttatggttcaattcttggacggcacatttgactgttgctttgtctgaatgcatcgtttctattagttgttgatctt |
25720448 |
T |
|
| Q |
113 |
tgttatagtgctaagctttgcgttaaagatattcactttctagcagttgtttaggttgtgttctattgacaatgaacttattttcttttctttgaaaaaa |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25720449 |
tgttatagtgctaagctttgcgttaaagatattcactttctagcagttgtttaggttgtgttctattggcaatgaacttattttcttttctttgaaaaaa |
25720548 |
T |
|
| Q |
213 |
cattattgcttgaattggtttaaatttagtagagttgaagttctctaattgagtaattgaatgattattttaggaatcccaatagatttaatgattaaac |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25720549 |
cattatagcttgaattggtttaaatttagtagagttgaagttctctaattgagtaattgaatgatgattttaggaatcccaatagatttaatgattaaac |
25720648 |
T |
|
| Q |
313 |
tatgtctattacctttgaatactatattcgattctaaattgatgattaaactgattgggctgtttggggactgtttttggatgaattttgacatgtttaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25720649 |
tatgtctattacctttgaatactatatttgattctaaattgatgattaaactgattgggctgtttggggactgtttttggatgaattttgacatgtttaa |
25720748 |
T |
|
| Q |
413 |
tgctggaaaattgggtcaaatctgcagaattgtagatggccttgctgtttgcgaggcaattat |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
25720749 |
tgctggaaaattgggtcaaatctgcagaattgtagatggccttgctgtttgtgaggcaattat |
25720811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 1478780 - 1478896
Alignment:
| Q |
114 |
gttatagtgctaagctttgcgttaaagatattcactttctagcagttgtttaggttgtgttctattgacaatgaacttattttcttttctttgaaaaaac |
213 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1478780 |
gttatagtgctaagctttgcattgaagatattcactttctagcagttgtttaggttgtgttctattggcaatgaacttattttcttttctttgaaaaaac |
1478879 |
T |
|
| Q |
214 |
attattgcttgaattgg |
230 |
Q |
| |
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||||| ||||||||||| |
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| T |
1478880 |
attatagcttgaattgg |
1478896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 325 - 475
Target Start/End: Original strand, 13593011 - 13593161
Alignment:
| Q |
325 |
ctttgaatactatattcgattctaaattgatgattaaactgattgggctgtttggggactgtttttggatgaattttgacatgtttaatgctggaaaatt |
424 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13593011 |
ctttgaatactatatttgattctaaattgatgattaaacggattgggctgtttggggactgtttttggatgaattttgacatgtttaatgctggaaaatt |
13593110 |
T |
|
| Q |
425 |
gggtcaaatctgcagaattgtagatggccttgctgtttgcgaggcaattat |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13593111 |
gggtcaaatctgcagaattgtagatggccttgctgtttgttaggcaattat |
13593161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 2078979 - 2079212
Alignment:
| Q |
13 |
tcatcaatcaaaggtaatattttcttatggttcaattcttggacgaca-----------catttgactgttgctttgtctgaatgcatcgtttctattag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||| || |||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
2078979 |
tcatcaatcaaaggtaatattttcttatgattcaattcttctacggcaatgtgttgtaacatttggctgttgctttgtctgaatgcatcgttactattag |
2079078 |
T |
|
| Q |
102 |
ttgttgatctttgttatagtgctaagctttgcgttaaagatattcactttctagcagttgtttaggttgtgttctattgacaatgaacttattttctttt |
201 |
Q |
| |
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|||||||||| ||||||||||||||||||||| || |||||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2079079 |
ttgttgatctatgttatagtgctaagctttgcattgaagatattcagtttctagccgttgattaggttgtgttctattggcaatgaacttattttctttt |
2079178 |
T |
|
| Q |
202 |
c-----tttgaaaaaacattattgcttgaattgg |
230 |
Q |
| |
|
| |||||||||||||||| ||||||||||| |
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|
| T |
2079179 |
cctttttttgaaaaaacattatagcttgaattgg |
2079212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 1263077 - 1263142
Alignment:
| Q |
265 |
gtaattgaatgattattttaggaatcccaatagatttaatgattaaactatgtctattacctttga |
330 |
Q |
| |
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||||||||||||| |||||||| | | |||||||||||||||||||||||||| | ||||||||| |
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|
| T |
1263077 |
gtaattgaatgatgattttagggacctcaatagatttaatgattaaactatgttttatacctttga |
1263142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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