View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18731_low_4 (Length: 404)
Name: NF18731_low_4
Description: NF18731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18731_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 29554276 - 29554619
Alignment:
| Q |
15 |
gatagtaatgaagcagggagcagtaagggaagaagcggaagaggaaaggggacgaatcgagctaccgtgttaacttatgataatgagtggtattgtgagc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554276 |
gatagtaatgaagcagggagcagtaagggaagaagcggaagaggaaaggggacgaatcgagctaccgtgttaacttatgataatgagtggtattgtgagc |
29554375 |
T |
|
| Q |
115 |
gatgtacctatgcaaacgtcggatctgccactgaatgcgccatgtgcgatgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554376 |
gatgtacctatgcaaacgtcggatctgccactgaatgcgccatgtgcgatgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactga |
29554475 |
T |
|
| Q |
215 |
atgcgtgatgtgcaatcaacagcgtcagtgacgcactataaacacatgtcttctgctcaaaggcctgtcagatgttagtttagagtctattatgttttat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554476 |
atgcgtgatgtgcaatcaacagcgtcagtgacgcactataaacaaatgtcttctgctcaaaggcctgtcagatgttagtttagagtctattatgttttat |
29554575 |
T |
|
| Q |
315 |
ttatattcttttatatcttttcgtaatgctaaactatatgaaac |
358 |
Q |
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| T |
29554576 |
ttatattcttttatatcttttcgtaatgctaaactatatgaaac |
29554619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 51 - 279
Target Start/End: Original strand, 29539494 - 29539731
Alignment:
| Q |
51 |
ggaagaggaaaggggacgaatcgagctaccgtgt---------taacttatgataatgagtggtattgtgagcgatgtacctatgcaaacgtcggatctg |
141 |
Q |
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| T |
29539494 |
ggaagaggaaaggggacaaatcgagctaccgtgtccagcaaaataaccgttgataatgagtggtattgtgttgaatgtacctatgcaaacgtcggatctg |
29539593 |
T |
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| Q |
142 |
ccactgaatgcgccatgtgcgatgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtca |
241 |
Q |
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|||||| |||||||||||| |||||||||||||| | |||| || ||||||||| ||||||||| ||| | ||||| | ||||||||||||||||||| |
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| T |
29539594 |
ccactgcttgcgccatgtgcagtgagtggtcttgtgggcaatgtacctatgcaaacatcggatctgccacagcatgcgcggtgtgcaatcaacagcgtca |
29539693 |
T |
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| Q |
242 |
gtgacgcactataaacacatgtcttctgctcaaaggcc |
279 |
Q |
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|||| ||||| ||||||||| ||||| |||||||||| |
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| T |
29539694 |
atgacccactagaaacacatgccttctactcaaaggcc |
29539731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 29556787 - 29556851
Alignment:
| Q |
286 |
atgttagtttagagtctattatgttttatttatattcttttatatcttttcgtaatgctaaacta |
350 |
Q |
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||||| ||||||| || || | |||||||||||||||||||||| | ||| |||||| ||||||| |
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| T |
29556787 |
atgtttgtttagaatccataaggttttatttatattcttttatacccttttgtaatgttaaacta |
29556851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 42780361 - 42780219
Alignment:
| Q |
27 |
gcagggagcagtaagggaagaagcggaagaggaaaggggacgaatcgagctaccgtgt---------taacttatgataatgagtggtattgtgagcgat |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||| |||||||| || |
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| T |
42780361 |
gcagggagcagtaagggaagaagtggaagaggaaaggggacaaatcgagctacagtgtccagcataataactaatgataatgagtggtcttgtgagcaat |
42780262 |
T |
|
| Q |
118 |
gtacctatgcaaacgtcggatctgccactgaatgcgccatgtg |
160 |
Q |
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| T |
42780261 |
gtacctatgcaaacgtcggatctgccactgcatgtgcgatgtg |
42780219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 42780282 - 42780152
Alignment:
| Q |
163 |
atgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatg-----cgtgatgtgcaatcaacagcgtcagtgacgcactataaac |
257 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||||||||||||| ||||| ||| ||| |||| ||||||||| |||| |||| ||||| ||| |
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| T |
42780282 |
atgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtgttgtgtaatcaacagtgtcaatgacccactacaaaa |
42780183 |
T |
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| Q |
258 |
acatgtcttctgctcaaaggcctgtcagatg |
288 |
Q |
| |
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| T |
42780182 |
aaatgtcttttgttcaaaggcttgttagatg |
42780152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 279
Target Start/End: Original strand, 42194847 - 42194963
Alignment:
| Q |
163 |
atgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtcagtgacgcactataaacacatg |
262 |
Q |
| |
|
||||||||||||||||| |||| || |||||||| || ||||||| ||| | ||||| ||||||||||||| |||| || |||| ||||||||||||||| |
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| T |
42194847 |
atgagtggtcttgtgagcaatgtacctatgcaaatgttggatctgccaccgcatgcgcgatgtgcaatcaagagcggcaatgacccactataaacacatg |
42194946 |
T |
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| Q |
263 |
tcttctgctcaaaggcc |
279 |
Q |
| |
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||||||||||||||||| |
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| T |
42194947 |
tcttctgctcaaaggcc |
42194963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 42194771 - 42194911
Alignment:
| Q |
27 |
gcagggagcagtaagggaagaagcggaagaggaaaggggacgaatcgagctaccgtgt---------taacttatgataatgagtggtattgtgagcgat |
117 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||||| || |
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| T |
42194771 |
gcagggagcagtaaaggaaaaagcggaagaggaaaggggacgaa---agctaccgtgtccagcagattaactgatgataatgagtggtcttgtgagcaat |
42194867 |
T |
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| Q |
118 |
gtacctatgcaaacgtcggatctgccactgaatgcgccatgtgc |
161 |
Q |
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| T |
42194868 |
gtacctatgcaaatgttggatctgccaccgcatgcgcgatgtgc |
42194911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 44374663 - 44374699
Alignment:
| Q |
294 |
ttagagtctattatgttttatt-tatattcttttata |
329 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
44374663 |
ttagagtctattatgttttattatatattcttttata |
44374699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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