View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18731_low_8 (Length: 274)
Name: NF18731_low_8
Description: NF18731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18731_low_8 |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 1354908 - 1355164
Alignment:
| Q |
18 |
ctatgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacat |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1354908 |
ctatgcagataagagatgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacat |
1355007 |
T |
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| Q |
118 |
tggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgcctttcttttggactttgaagaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1355008 |
tggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgtctttcttttggactttgaagaat |
1355107 |
T |
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| Q |
218 |
ctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgc |
274 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
1355108 |
ctgaaagagggtacacttgaattacctgaaggattcgaggaaaggacgaaagaacgc |
1355164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 1361794 - 1362050
Alignment:
| Q |
18 |
ctatgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1361794 |
ctatgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacat |
1361893 |
T |
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| Q |
118 |
tggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgcctttcttttggactttgaagaat |
217 |
Q |
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| T |
1361894 |
tggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagctttctgggttgtctttcttttgggctttgaagaat |
1361993 |
T |
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| Q |
218 |
ctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgc |
274 |
Q |
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| T |
1361994 |
ctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgc |
1362050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 20492581 - 20492832
Alignment:
| Q |
20 |
atgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacattg |
119 |
Q |
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||||||||||||||| |||| || ||||| ||| | |||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||| |
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| T |
20492581 |
atgcagataagagacaatgaggaagaagaaaacgaccctgattgggtgaaaatcaaggcttggttggattcaaaagaatcatcttcggttgtttacattg |
20492680 |
T |
|
| Q |
120 |
gatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgcctttcttttggactttgaagaatct |
219 |
Q |
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|||| ||||| ||||| ||||| | ||| ||||| |||||||||| ||| |||||||||||| ||| |||| |||||||||||| ||||||| || || |
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| T |
20492681 |
gattcgggagcgagttaaagttaaatcaacaagatctaactgagttagctcatggaattgagcaatctaggttacctttcttttgggctttgaaaaacct |
20492780 |
T |
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| Q |
220 |
gaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaa |
271 |
Q |
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||||| ||||||||||||||||| ||||||||||| |||||||| |||||| |
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| T |
20492781 |
taaagaaggtacacttgaattacccgaaggatttgaagaaagaacaaaagaa |
20492832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 29954446 - 29954697
Alignment:
| Q |
20 |
atgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacattg |
119 |
Q |
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||||||||||||||||| ||||||||||| | ||| ||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |
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| T |
29954446 |
atgcagataagagacgacgaagaggaagaaagcaaccctagttgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctgttgtttacattg |
29954545 |
T |
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| Q |
120 |
gatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgcctttcttttggactttgaagaatct |
219 |
Q |
| |
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|||||||||| ||||||||||| || || ||||| |||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
29954546 |
gatttgggagcgagttgaagttaagccaacaagatctaactgagttagcgcatggaattgagctttctaggttgcctttcttttgggctttgaaaaatct |
29954645 |
T |
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| Q |
220 |
gaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaa |
271 |
Q |
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| T |
29954646 |
taaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaa |
29954697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 51370006 - 51369754
Alignment:
| Q |
21 |
tgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacattgg |
120 |
Q |
| |
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|||| ||||||||||| || | || || ||||| ||||||||||| | ||||| | |||||||| |||| ||||||||||||||||||||||||||| |
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| T |
51370006 |
tgcatataagagacgaccaacatgatgaaaacaaccctgattgggtccacatcaaggcatggttggactcaaaagaatcatcttctgttgtttacattgg |
51369907 |
T |
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| Q |
121 |
atttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgcctttcttttggactttgaagaatctg |
220 |
Q |
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|||||| || |||| ||||| ||| |||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||| ||||||| ||| |
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| T |
51369906 |
atttggaagcgagtcaaagttagatcaacaagatttaactgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgt |
51369807 |
T |
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| Q |
221 |
aaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacg |
273 |
Q |
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||||| ||| | |||||||||| ||||||| ||||||||||| |||||||| |
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| T |
51369806 |
aaagacggtgtatctgaattacctcaaggattcgaggaaagaacaaaagaacg |
51369754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 11531760 - 11532012
Alignment:
| Q |
20 |
atgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacattg |
119 |
Q |
| |
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|||||||||||||| || ||| ||||||| ||||| | ||||||| |||||||||| | ||||||||||||| |||||| ||||||||||||||||||| |
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| T |
11531760 |
atgcagataagagaagacgaa-aggaagaaaacaaccttgattggatgaaaatcaaggcatggttggattcaaaagaatcgtcttctgttgtttacattg |
11531858 |
T |
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| Q |
120 |
gatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgcctttcttttggactttgaagaatct |
219 |
Q |
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|||||||||| ||| ||| | ||||| ||||| ||| |||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
11531859 |
gatttgggagcgagacgaaaataagtcaacaagatctaattgagttagctcatggaattgagctttctaggttgcctttcttttgggctttgaaaaatct |
11531958 |
T |
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| Q |
220 |
gaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacg |
273 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |
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| T |
11531959 |
taaagagggtacacttgaattacctaaagaatttgaggaaagaacaaaagaacg |
11532012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 14588867 - 14589123
Alignment:
| Q |
18 |
ctatgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacat |
117 |
Q |
| |
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|||||||||||||||| || ||||| || || || |||||||| |||||||||||||| | ||||||||||||| ||||||||||||| |||||||||| |
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| T |
14588867 |
ctatgcagataagagatgacgaagaagatgaaaagaatcctgaatgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacat |
14588966 |
T |
|
| Q |
118 |
tggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgcctttcttttggactttgaagaat |
217 |
Q |
| |
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|||||||||||| |||| |||||| ||||| ||||| |||||||||| ||| ||||||||||||||||| |||| || ||||||||| |||| || || |
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| T |
14588967 |
tggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagctttctaggttaccgttcttttgggctttaaaagat |
14589066 |
T |
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| Q |
218 |
ctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgc |
274 |
Q |
| |
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|| ||||||||| ||||||||| ||| |||| || ||||||||||| ||||||||| |
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| T |
14589067 |
cttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgc |
14589123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 14622525 - 14622781
Alignment:
| Q |
18 |
ctatgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacat |
117 |
Q |
| |
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|||||||||||||||| || ||||| || || || |||||||| |||||||||||||| | ||||||||||||| ||||||||||||| |||||||||| |
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| T |
14622525 |
ctatgcagataagagatgacgaagaagatgaaaagaatcctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacat |
14622624 |
T |
|
| Q |
118 |
tggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgcctttcttttggactttgaagaat |
217 |
Q |
| |
|
|||||||||||| |||| |||||| ||||| ||||| |||||||||| ||| ||||||||||||||||| |||| || ||||||||| |||| || || |
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| T |
14622625 |
tggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagctttctaggttaccgttcttttgggctttaaaagat |
14622724 |
T |
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| Q |
218 |
ctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgc |
274 |
Q |
| |
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|| ||||||||| ||||||||| ||| |||| || ||||||||||| ||||||||| |
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| T |
14622725 |
cttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgc |
14622781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 12846422 - 12846677
Alignment:
| Q |
18 |
ctatgcagataagagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacat |
117 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
12846422 |
ctatgcagataagagacgatgaggaggaagagaaccatcctgattggttgaaaataaaaaaatggctggattcaagagaatcatcttccgttgtttacat |
12846521 |
T |
|
| Q |
118 |
tggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctgggttgcctttcttttggactttgaagaat |
217 |
Q |
| |
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|||||||||||| ||||||| ||| | || ||||| |||| || || ||| ||||||||||||||||| |||| |||||||||||| ||||||| || |
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| T |
12846522 |
tggatttgggagcgagttgaggttaacgcaaaaagatctaaccgaattagctcatggaattgagctttctaggttacctttcttttgggctttgaaaaac |
12846621 |
T |
|
| Q |
218 |
ctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacg |
273 |
Q |
| |
|
|| ||| ||||||||||||| |||||| ||||||| || || |||| |||||||| |
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|
| T |
12846622 |
ctaaaaaagggtacacttgagttacctaaaggattcgaagatcgaaccaaagaacg |
12846677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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