View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18732_high_1 (Length: 728)
Name: NF18732_high_1
Description: NF18732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18732_high_1 |
 | |
|
| [»] scaffold0181 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 16 - 716
Target Start/End: Original strand, 16417300 - 16418002
Alignment:
| Q |
16 |
attgacatgacgttagtcgttagtgnnnnnnnagatatcccattgtcaaacaacccaacctctatggattccggctaaagcctccatcatcaaagcattt |
115 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16417300 |
attgacatgacgttagttgttagtgttttattagatatcccattgtcaaacaacccaacctctatggattccggctaaagcctccatcatcaaagcattt |
16417399 |
T |
|
| Q |
116 |
gcttccattgatctattttcgctctgagattctccat--ctagtttttattattgtggaaaagcatannnnnnncatcagcctgaatcttctgaagtctg |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
16417400 |
gcttccattgatctattttcgatctgagattctccatatctagtttttattatagtggaaaagcatttttttttcatcagcctgaatcttctgaaatctg |
16417499 |
T |
|
| Q |
214 |
ttgtgccctctcttttgatttactttcnnnnnnnctccaaggctcccacagcggggcttaccgtttccttacaacttctgaagaaccaattgataggggc |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16417500 |
ccgtgccctctcttttgatttactttctttttttctccaaggctcccacagcggggcttaccatttctttacaacttctgaagaaccaattgataggggc |
16417599 |
T |
|
| Q |
314 |
ttagtcaacaatgtatggcacatacaggttttgttaaaggttttcgtatctgcttggcgtcttcttcgcaataggttaccaacaaaagataatcttgtgc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16417600 |
ttagtcaacaatgtatggcacatacaggttttgttaaaggttttcgtatctgtttggcgtcttcttcgcaataggttaccaacaaaagataatcttgtgc |
16417699 |
T |
|
| Q |
414 |
ggagaagagtgcttcatgaaggagacaatacttgtgttggacgatgtggttcggggcagatgctgaatcatcnnnnnnnngggttgtggcgtcttcgacg |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16417700 |
ggagaagagtgcttcatgaaggagacaatacttgtgttggacggtgtggttcggggcagatgctgaatcatcttttttttgggttgtggcgtcttcgacg |
16417799 |
T |
|
| Q |
514 |
ctttattgcctcttgtttggaggtggttcgacatttcgacggttgatactattgtcttagctgatcactttcttcagtttggttagtgtgttgggttatc |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
16417800 |
ctttattgcctcttgtttggaggtggttcgacatttcgacggttgatactattgtcttacgtgatcactttcttcagtttggctagtgtgttgggttacc |
16417899 |
T |
|
| Q |
614 |
gcggtcatctcattctttcttaaagctaatttggctagcgtgtgtctggactatctggaaggaaaggaataatcgagtttttaaaaatacgacattggag |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16417900 |
gcggtcatctcattctttcttaaagctaatttggctagcgtgtgtctggactatctagaaggaaatgaataatcgagtttttaaaaatacgacattggag |
16417999 |
T |
|
| Q |
714 |
gtg |
716 |
Q |
| |
|
||| |
|
|
| T |
16418000 |
gtg |
16418002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 269 - 715
Target Start/End: Complemental strand, 10217589 - 10217148
Alignment:
| Q |
269 |
gcttaccgtttccttacaacttctgaagaaccaattgataggggcttagtcaacaatgtatggcacatacaggttttgttaaaggttttcgtatctgctt |
368 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||||||||||||| | ||| | ||||||| ||| |||| ||||||||||||| | |||| |
|
|
| T |
10217589 |
gcttaccatttccttacatcttccgaagaaccaattgataggggcttagtcgagaatatttggcacaaacaagtttcaataaaggttttcgtgttcgctt |
10217490 |
T |
|
| Q |
369 |
ggcgtcttcttcgcaataggttaccaacaaaagataatcttgtgcggagaagagtgcttcatgaaggagacaatacttgtgttggacgatgtggttcggg |
468 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||| |||||||| || | |||||||| || |
|
|
| T |
10217489 |
gacgtcttctccgcaataggttaccaacaaaagataatcttgtgcggagagggattcttcatgaaggggaca---cttgtgttagagggtgtggttcagg |
10217393 |
T |
|
| Q |
469 |
gcagatgctgaatcatcnnnnnnnngggttgtggcgtcttcgacgctttattgcctcttgtttggaggtggttcgacatttcgacggttgatactattgt |
568 |
Q |
| |
|
| | | | | | || |||||| | ||||||| | |||| | | || |||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
10217392 |
ggaaacgacaactggtctttttt--gggttgcgacgtcttcagcactttgtggactattgtttggaggtggttaggcatttcgacggttgatactattgt |
10217295 |
T |
|
| Q |
569 |
cttagctgatcactttcttcagtttggttagtgtgttgggttatcgcggtcatctcattctttcttaaagctaatttggctagcgtgtgtctggactatc |
668 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||| ||||||| | || ||||||||||||||||| || |||| ||||||||||||||| ||||||||| |
|
|
| T |
10217294 |
cttacgtgatcactttcttcagttaggtcagtgtgctgggttaccacgatcatctcattctttcttgaaactaagttggctagcgtgtgtatggactatc |
10217195 |
T |
|
| Q |
669 |
tggaaggaaaggaataatcgagtttttaaaaatacgacattggaggt |
715 |
Q |
| |
|
||| |||||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
10217194 |
tgggaggaaaggaacaatcgagtttttgaaaatacgacattgaaggt |
10217148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 513 - 672
Target Start/End: Complemental strand, 27150089 - 27149930
Alignment:
| Q |
513 |
gctttattgcctcttgtttggaggtggttcgacatttcgacggttgatactattgtcttagctgatcactttcttcagtttggttagtgtgttgggttat |
612 |
Q |
| |
|
||||||| | |||||||||||| ||||| ||||||||||| || |||||||| |||||| | ||||||||| |||||||||| |||| ||| ||| |
|
|
| T |
27150089 |
gctttatggtctcttgtttggaaatggttagacatttcgacagtggatactatcgtcttacggggccactttctttagtttggttaatgtgctggattac |
27149990 |
T |
|
| Q |
613 |
cgcggtcatctcattctttcttaaagctaatttggctagcgtgtgtctggactatctgga |
672 |
Q |
| |
|
| | ||||||||||||||| | ||| | |||||||| ||||||||||||| | |||||| |
|
|
| T |
27149989 |
tgtgatcatctcattctttcctgaagttgatttggcttgcgtgtgtctggattctctgga |
27149930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 364 - 448
Target Start/End: Complemental strand, 27150225 - 27150141
Alignment:
| Q |
364 |
tgcttggcgtcttcttcgcaataggttaccaacaaaagataatcttgtgcggagaagagtgcttcatgaaggagacaatacttgt |
448 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||||||||||| |||||| |||||| |||||| | |||||| |||||||| |
|
|
| T |
27150225 |
tgcttgacgtcttcttcgcaacagattaccaacaaaagataatctagtgcggcaaagagttcttcattacggagacgatacttgt |
27150141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 654 - 710
Target Start/End: Complemental strand, 32769457 - 32769401
Alignment:
| Q |
654 |
tgtgtctggactatctggaaggaaaggaataatcgagtttttaaaaatacgacattg |
710 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32769457 |
tgtgtctggattatctagaaggaaaggaataatcgagtctttaaaaatacgacattg |
32769401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 685
Target Start/End: Complemental strand, 2932242 - 2932175
Alignment:
| Q |
618 |
tcatctcattctttcttaaagctaatttggctagcgtgtgtctggactatctggaaggaaaggaataa |
685 |
Q |
| |
|
|||||||||||||| || | ||| |||||||| |||| ||| |||||||| | ||||||||||||||| |
|
|
| T |
2932242 |
tcatctcattctttttttaggctgatttggcttgcgtctgtttggactatttagaaggaaaggaataa |
2932175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 697
Target Start/End: Complemental strand, 12951 - 12910
Alignment:
| Q |
656 |
tgtctggactatctggaaggaaaggaataatcgagtttttaa |
697 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
12951 |
tgtctggatcatctggaaggaaaggaataaccgagtttttaa |
12910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 685
Target Start/End: Original strand, 8090887 - 8090932
Alignment:
| Q |
640 |
taatttggctagcgtgtgtctggactatctggaaggaaaggaataa |
685 |
Q |
| |
|
|||| ||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
8090887 |
taatctggttagcttgtgtctggattatctggaaggaaaggaataa |
8090932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University