View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18732_high_3 (Length: 436)
Name: NF18732_high_3
Description: NF18732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18732_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 50048826 - 50048418
Alignment:
| Q |
19 |
gttgtgttactcttagttgttgtcatcgatcttttgggttgaattttttcgaatgaacaatccacaacaatagaaacaattttaaacaatatgaaaannn |
118 |
Q |
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| T |
50048826 |
gttgtgttactcttagttgttgtcatcgatcttttgggttgaattttttcgaatgaacaatccacaacaatagaaacaatattaaacaatatgaaaaaat |
50048727 |
T |
|
| Q |
119 |
nnnnnnnnnatcttatataggaaaaaatgttgtattgtagtgtaacattttttcgttcaatattacttacccttcacttcataattttgtaccattttat |
218 |
Q |
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| T |
50048726 |
ttattttttatcttatataggaaaaaatgttgtcttttagtgtaacattttttcgttcaatattacttacccttcacttcataattttgtaccattttat |
50048627 |
T |
|
| Q |
219 |
cattcatggacaataaaaatggtgtccgtctttacgcgagtagttataactaaatttagtttaatcaagtattcgttgttgttagtttgtatgtcttcag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50048626 |
cattcatggacaataaaaatggtgtccgtctttacgcgagtagttataactaaatttagtttaatcaagtattcgttgttgttagtttgtatgtcttcag |
50048527 |
T |
|
| Q |
319 |
tttgcatccatttgaatatgaaacgtgctagttaatcactttggttccgtttggttgtctacccccttttatcttgacaccaaatagttacttcactctg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50048526 |
tttgcatccatttgaatatgaaacgtgctagttaatcactttggttccgtttggttgtctacccccttttatcttgacactaaatagttacttcactctg |
50048427 |
T |
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| Q |
419 |
tcttcattt |
427 |
Q |
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| T |
50048426 |
tcttgattt |
50048418 |
T |
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