View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18732_high_6 (Length: 412)
Name: NF18732_high_6
Description: NF18732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18732_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 2 - 405
Target Start/End: Complemental strand, 50048445 - 50048042
Alignment:
| Q |
2 |
aaatagttacttcactctgtcttgatttttgtctcctagatttactttcagttttgtttaataggacaagcaatggctgaacaattcaaggacaccaaaa |
101 |
Q |
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| T |
50048445 |
aaatagttacttcactctgtcttgatttttgtctcctagatttactttcagttttgtttaataggacaagcaatggctgaacaattcaaggacaccaaaa |
50048346 |
T |
|
| Q |
102 |
actatgaaatatatacttcgtattgttcctctattttctcatgattattgcgttttcataataggtatgtcaaacatttattcttccccatggatctagc |
201 |
Q |
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| T |
50048345 |
actatgaaatatatacttcgtattgttcctctattttctcatgattattgcgttttcataataggtatgtcaaacatttattcttccccatggatctagc |
50048246 |
T |
|
| Q |
202 |
ttccactctgccatttcagcagatataccaacttatagcaggcaaatcacacgacagaggggaagtctttggctttctgaacatgcttagactctggcga |
301 |
Q |
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| T |
50048245 |
ttccactctgccatttcagcagatataccaacttatagcaggcaaatcacacgacagaggggaagtctttggctttctgaacatgcttagactctggcga |
50048146 |
T |
|
| Q |
302 |
ttgaggcgtgttagtgagctcttctcaaggtatatttctttgggatatttttgtggttataaaagacattatacgtatgttctgctatttcccacaggtt |
401 |
Q |
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| T |
50048145 |
ttgaggcgtgttagtgagctcttctcaaggtatatttctttaggatatttttgtggttataacagacattatacgtatgttctgctatttcccacatgtt |
50048046 |
T |
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| Q |
402 |
ctgc |
405 |
Q |
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|||| |
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| T |
50048045 |
ctgc |
50048042 |
T |
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