View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18732_low_2 (Length: 511)
Name: NF18732_low_2
Description: NF18732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18732_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 36575306 - 36574823
Alignment:
| Q |
1 |
tataagtgtggaagtcaaaaatcaaagcctaaaacaatacaccagaacaaggagaaatgagtgcacagtggaaatggaaaagggagtggggaatatgcca |
100 |
Q |
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|||| |||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36575306 |
tataggtgtggaattaaaaaatcaaagcctaaaacaatacgccagaacaaggagaaacgagtgcacagtggaaatggaaaagggagtggggaatatgcca |
36575207 |
T |
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| Q |
101 |
tgcacagtcgtctagagttgatagtagtttgacacattatggagggttaaatcggacattttggatgaaatggaaaacggaataggaaatgccagctcat |
200 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
36575206 |
tgcagagtcgtctagagttgatagtagtttgaaacattatggagggttaaatcggacattttgggtgaaatggaaaacggaatagaaaatgccagctcat |
36575107 |
T |
|
| Q |
201 |
tcgcgggatacgcacgagaattctctcgtgcacttcagcattttccatattttatgcacataaggtctcagattcgattcttttcgatgtcaagttccat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| || |
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| T |
36575106 |
tcgcgggatacgcacgagaattctctcgtgcacttcaacattttccatattttatgcacataagatctcagatt----------cgatgtcaagttcgat |
36575017 |
T |
|
| Q |
301 |
atgttagtttctcttatttaaagaaagtaaaaattatgtacaattctttcatccggtatcactcggtcgcatatcgtagcaagtatatcacttctatagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
36575016 |
atgttagtttctcttatttaaagaaagtaaaaattatgtacaattctttcatccggtatcactcagtcgtatatcgtagcaagtatatcacttctatagt |
36574917 |
T |
|
| Q |
401 |
tgacctctacaaataaactcgtgtttttatgtataaggttttggtaaaaatgttagttaatcatcttcaaaaggttatcagtagtgtcatatct |
494 |
Q |
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| T |
36574916 |
tgacctatagaaataaactcgtgtttttatgtacaaggttttggtaaaaatgttagttaatcatcttcaaaaggttatcagtagtgtcatatct |
36574823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 16668298 - 16668549
Alignment:
| Q |
1 |
tataagtgtggaagtcaaaaatcaaagcctaaaacaatacaccagaacaaggagaaatgagtgcacagtggaaatggaaaagggagtggggaatatgcca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |
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| T |
16668298 |
tataagcgtggaagtcaaaaatcaaagcctaaaacaatacggcagaacaaggagaaacgggtgcacagtggaactggaaaagggagtggggaatatgcca |
16668397 |
T |
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| Q |
101 |
tgcacagtcgtctagagttgatagtagtttgacacattatggagggttaaatcggacattttggatgaaatggaaaacggaataggaaatgccagctcat |
200 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||| ||||| |
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| T |
16668398 |
tgcacagtcgcctagagttgatagtagtttgacaaattatggagggttaaatcggacattttgaatcaaatggaaaacagaataggaaataccatctcat |
16668497 |
T |
|
| Q |
201 |
tcgcgggatacgcacgagaattctctcgtgcacttcagcattttccatattt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16668498 |
tcgcgggatacgcacgagaattctctcgtgcacttcagcattttccttattt |
16668549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 44516700 - 44516796
Alignment:
| Q |
149 |
aaatcggacattttggatgaaatggaaaacggaataggaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcc |
246 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44516700 |
aaatcggac-ttttggatgaaatggaaaacagaataggaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcc |
44516796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 44516609 - 44516701
Alignment:
| Q |
1 |
tataagtgtggaagtcaaaaatcaaagcctaaaacaatacaccagaacaaggagaaatgagtgcacagtggaaatggaaaagggagtggggaa |
93 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
44516609 |
tataagtgtggaagtaaaaaatcaaagcctaaaacaatatggtagaacaaggagaaacgagtgcacaatggaaatggaaaagggagtggggaa |
44516701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 8017764 - 8017797
Alignment:
| Q |
197 |
tcattcgcgggatacgcacgagaattctctcgtg |
230 |
Q |
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| T |
8017764 |
tcattcgcgggatacacacgagaattctctcgtg |
8017797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 21133759 - 21133710
Alignment:
| Q |
197 |
tcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcc |
246 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
21133759 |
tcattcgcgggatacacacgagaattctctcgtgtcgttcagcattttcc |
21133710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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