View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18732_low_4 (Length: 422)
Name: NF18732_low_4
Description: NF18732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18732_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 2755454 - 2755060
Alignment:
| Q |
18 |
ctttttaggtagaatttcagctttaatctttcttttattcctaatctacatgtggtcttctttatccactattataacagtcaacaccattcatgtttgt |
117 |
Q |
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| T |
2755454 |
ctttttaggtagaatttcggctttaatctttcttttattcctaatctacatgtggtcttctttatccactattataacagtcaacaccattcatgtttgt |
2755355 |
T |
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| Q |
118 |
tgttctacaagaaagttcagtaatagcttctattgtctttcttcacccactcatactaatacttcctttgaaatctcaaattattccataaacaataata |
217 |
Q |
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| T |
2755354 |
tgttctacaagaaagttcagtaatagcttttattgtctttcttcacccactcatactaatacttcctttgaaatctcaaattattccataaacaataata |
2755255 |
T |
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| Q |
218 |
ctattagcacctctataattactacaattgaaaacattgatgatggtaataatgcatctcaagaacttggaacttttccaattactacaccatatgatga |
317 |
Q |
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| T |
2755254 |
ctattagcacctctataattactacaattgaaaacattgatgatggtaataatgcatctcaagaacttggaacttttccaattactacaccatatgatga |
2755155 |
T |
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| Q |
318 |
agaggttgcatatgctgttaagatcatcgaggaacaattgaaggttcaacgatcgtggagatccgaaaataaaaacaatgcaacttgtgatgatg |
412 |
Q |
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| T |
2755154 |
agaggttgcatatgctgttaagatcatcgaggaacaattgaaggttcaacgatcgtggagatccgaaaataaaaacaatgcaacttgtgatgatg |
2755060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 26 - 412
Target Start/End: Complemental strand, 2759407 - 2759021
Alignment:
| Q |
26 |
gtagaatttcagctttaatctttcttttattcctaatctacatgtggtcttctttatccactattataacagtcaacaccattcatgtttgttgttctac |
125 |
Q |
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| T |
2759407 |
gtagaatttctgctttaatctttcttttaatccttatatacatttggtcttctttctccacaattataacaggaaacatcattcatgtttgtttttctac |
2759308 |
T |
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| Q |
126 |
aagaaagttcagtaatagcttctattgtctttcttcacccactcatactaatacttcctttgaaatctcaaattattccataaacaataatactattagc |
225 |
Q |
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| T |
2759307 |
aagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcctttgatatcccaacttattccataaacaataatactgttagc |
2759208 |
T |
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| Q |
226 |
acctctataattactacaattgaaaacattgatgatggtaataatgcatctcaagaacttggaacttttccaattactacaccatatgatgaagaggttg |
325 |
Q |
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| T |
2759207 |
acctccattattactactactgaaaaaattgaggttagtaataatgtaacacaggaacttggaaatttgtcaattggtactccgtataatgaagaggttg |
2759108 |
T |
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| Q |
326 |
catatgctgttaagatcatcgaggaacaattgaaggttcaacgatcgtggagatccgaaaataaaaacaatgcaacttgtgatgatg |
412 |
Q |
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| T |
2759107 |
caaatgctgttaagatcattgaggaacacttgaaggttcatcgatcttggaggtccgaaaataaaaacaatgcaacttgtgatgatg |
2759021 |
T |
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