View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18732_low_5 (Length: 418)
Name: NF18732_low_5
Description: NF18732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18732_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 33399041 - 33399434
Alignment:
| Q |
18 |
ttctttgatatcaaataattcaacatgattttattattggacaggaaaacaaatgcaaaccccattgtaagaaattcaggaagagctataagatcagatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33399041 |
ttctttgatatcaaataattcaacatgattttattattggacaggaaaacaaatgcaa-ccccattgtaagaaattcaggaagagctataagatcagatt |
33399139 |
T |
|
| Q |
118 |
tgaaatcatcactaggaaacgtgtgattctttttatttatgtgtgtaaataaattcaccaacataaagaaaataaataattaatgattttagtcactaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33399140 |
tgaaatcatcactaggaaacgtgtgattctttttatttatgtgtgtaaataaattcaccaacataaagaaaataaataattaatgattttagtaactaga |
33399239 |
T |
|
| Q |
218 |
aaaaatagccccactttgaaacatgacacatgaactaatccaatctcaaacagttatcagattcctgtgaatcgttttgaatagcttcttttgcagcagg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33399240 |
aaaaatagccccactttgaaacatgacacatgaactaatccaatctcaaacagttatcagattcctgtgaatcgttttgaatagctacttttgcagcagg |
33399339 |
T |
|
| Q |
318 |
gaccgtcggggagcggtccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtgagggtacaggagaccaatttatctctgatgc |
412 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33399340 |
gaccggcggggagcggtccatggtgcatttgaaggtggtgctgcttgaggggccggtgtaggtgagggtacaggagaccaatttatctctgatgc |
33399434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 256 - 411
Target Start/End: Original strand, 33395394 - 33395549
Alignment:
| Q |
256 |
tccaatctcaaacagttatcagattcctgtgaatcgttttgaatagcttcttttgcagcagggaccgtcggggagcggtccatggtgcatttgaaggcgg |
355 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
33395394 |
tccaatctcaaacagctatcaaatttctgtgaatcattttgaatagcttctttggcagtagggaccggcgggcagcggtccatggtgcatttgaaggcgg |
33395493 |
T |
|
| Q |
356 |
tgctgcttgaggggccggtgtaggtgagggtacaggagaccaatttatctctgatg |
411 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
33395494 |
tgctacttcaggggacggtgtaggtgagggcaccggagaccaagttatctctgatg |
33395549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 33395566 - 33395617
Alignment:
| Q |
335 |
ccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtgagggt |
386 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||||||||||||||||| |
|
|
| T |
33395566 |
ccatggtgcatttgaagacggtgctgcttcatgggccggtgtaggtgagggt |
33395617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 33399549 - 33399600
Alignment:
| Q |
335 |
ccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtgagggt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
33399549 |
ccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggt |
33399600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 33399450 - 33399500
Alignment:
| Q |
335 |
ccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtgaggg |
385 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||| |||||||||||||| |
|
|
| T |
33399450 |
ccatggtgcatttgaaggaggtgcggcttcaggggctggtgtaggtgaggg |
33399500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University