View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18733_high_1 (Length: 637)
Name: NF18733_high_1
Description: NF18733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18733_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Complemental strand, 55374820 - 55374200
Alignment:
| Q |
1 |
atgtaagttgataagttttcataaacgaattaaagttaatctaaactaggctccattgtaacttctagcataattgacaaatttgttaaatatttagaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
55374820 |
atgtaagttgataagttttcataaacgaattaaagttaatctaaattaggctccattgtaacttctagcataattgacaaattagttaaatatttaaaac |
55374721 |
T |
|
| Q |
101 |
taaattctaattttacttagcttttgacttaaatataagttattatattgaatccaagcatgacaatttcacaagacgtgcttgtcctacttaaaagccg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55374720 |
taaattctaattttacttagcttttgacttaaatataagttattatattgaatccaagcatgagaatttcacaagacgtgcttgtcctacttaaaagccg |
55374621 |
T |
|
| Q |
201 |
tccaaatatatagatttctgaggagctttctattgtaaacactaattaacttcctatgtccattgaatcatcatcattttattctaataacacaacactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55374620 |
tccaaatatatagatttctgaggagctttctattgtaaacactaattaacttcctatgtccattgaatcatcatcattttattctaataacacaccactt |
55374521 |
T |
|
| Q |
301 |
tnnnnnnnnnnn---tggaagtataacttttgtatcaaagtttaagaaattgtatagtaagtcaactaaccaagctcgtgcaaccacgtttaatgttaac |
397 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55374520 |
taaaaaaaaataaaatggaagtataacttttgtatcaaagtttaagaaattgtatagtaagtcaactaaccaagctcgtgcaaccacgtttaatgttaac |
55374421 |
T |
|
| Q |
398 |
taaactcaaaaaatgtttaagtcaagctcctaaaatgtatgcacaaccttctcctcacctattaaatgagcacattgttccctttgtaattacttcaacc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55374420 |
taaactcaaaaaatgtttaagtcaagctcctaaaatgtatgcacaaccttctcctcacctattaaatgagcacattgttccctttgtaattacttcaacc |
55374321 |
T |
|
| Q |
498 |
tcaacacaatcacttaatcatggccatttcaacttcactcctcttactttcatgcttcttactaccaattgttctaagctttgttaatgcctattccaaa |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55374320 |
tcaacacaatcacttaatcatggccatttcaacttcactcctcttactttcatgcttcttactaccaattgttctaagctttgttaatgcctattccaaa |
55374221 |
T |
|
| Q |
598 |
gagaactactataacactaac |
618 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
55374220 |
gagaactactataacactaac |
55374200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University