View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18733_high_3 (Length: 543)
Name: NF18733_high_3
Description: NF18733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18733_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 8939903 - 8939377
Alignment:
| Q |
1 |
ttattcatctacaactaacacaaatatctttctcctaaaaatccactaccgtgccggaccctcattcacacagaatatgctgatgcgtaagcactaacta |
100 |
Q |
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| T |
8939903 |
ttattgatctacaactaacacaaatatctttctcctaaaaatccactaccgtgccggacccttattcacacagaatatgctgatgcgtaagaactgacta |
8939804 |
T |
|
| Q |
101 |
aactaatagtcgccggaatggtcctaaatgccaaactacactacaatacaattaaacccgccaaacgacaaataccataccatacattccaaacacaact |
200 |
Q |
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| T |
8939803 |
aactaatagtcgccggaatggtcctaaatgccaaactacactacaatacaattaaaccagccaaacgacaaataccataccatacattccaaacacaact |
8939704 |
T |
|
| Q |
201 |
aacaacactttcctttgccctttccacttaaaagaagaaaactcaccaccatttaacatggcggcgacggcgatgttctcttcttcgctctttccaatca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8939703 |
aacaacactttcctttgccctttccacttaaaagaagaaaactcaccaccatttaacatggcgtcgacggcgatgttctcttcttcgctctttccaatca |
8939604 |
T |
|
| Q |
301 |
cacctcttaacaaatcatcatcttcacgcaactctctaatctttcgtcctctttcatttcgtcctccacttttcagaattcgttcgtctttgttacaaga |
400 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8939603 |
cacctcttaacaaattatcatcttcacgaaactctctaatctttcgtcctctttcatttcgtcctccacttttcagaattcgttcgtctttgttacaaga |
8939504 |
T |
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| Q |
401 |
taaagaagataaagttattacacaaaacacttttccttctaaaacctctcctttagattccgttactgaaaattcaactaatgacgatgatacttcatct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8939503 |
taaagaagataaagttattacacaaaacacttttccttctaaaacctctcctttagattccgttactgaaaattcaactaatgacgatgatacttcatct |
8939404 |
T |
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| Q |
501 |
actagtgcttgggaaaaaggggttatt |
527 |
Q |
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| T |
8939403 |
actagtgcttgggaaaaaggggttatt |
8939377 |
T |
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