View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18733_low_11 (Length: 273)
Name: NF18733_low_11
Description: NF18733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18733_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 13333852 - 13334093
Alignment:
| Q |
19 |
atataggaatcgacatcaacacgattaggtcttcagctactgctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagtta |
118 |
Q |
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| T |
13333852 |
atataggaatcgacatcaacacgattaggtcttcagctactgctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagtta |
13333951 |
T |
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| Q |
119 |
taatcctgcctcgaaaaaattgactgcgctggtaacttatctaaatggtcctgtcatagaggaaactgctgtatcttatactgttgattttgcggctatt |
218 |
Q |
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| T |
13333952 |
taatcctgcctcgaaaaaattgactgcgctggtaacttatctaaatggtcctgtcatagaggaaactgctgtatcttatactgttgattttgcggctatt |
13334051 |
T |
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| Q |
219 |
ctgcccgaatatgtccttgttggtttctccggtgccacaggt |
260 |
Q |
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| T |
13334052 |
ctgcccgaatatgtcctggttggtttctccggtgccacaggt |
13334093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 13308684 - 13308836
Alignment:
| Q |
19 |
atataggaatcgacatcaacacgattaggtcttcagctactgctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagtta |
118 |
Q |
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|||||||||| ||||||||||||||| |||||| | || || |||||||||||||||| ||| ||||| ||||||||||||| | ||||||||| |
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| T |
13308684 |
atataggaattgacatcaacacgattgagtcttcgatcagtgttccatggccaatcgatcgtcaacctcaaggaacgataggaaaggctcgcataagtta |
13308783 |
T |
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| Q |
119 |
taatcctgcctcgaaaaaattgactgcgctggtaacttatctaaatggtcctg |
171 |
Q |
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|||| ||||||| ||| | |||| || | |||||||||| |||| |||||| |
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| T |
13308784 |
taatactgcctcaaaagacttgagtgtatttgtaacttatccaaatagtcctg |
13308836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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