View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18733_low_2 (Length: 606)
Name: NF18733_low_2
Description: NF18733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18733_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Complemental strand, 41167048 - 41166609
Alignment:
| Q |
19 |
acaaggcaaacctctatgtggatgatcaggaaatccagaaggagcagcaactgcaataattcacatttttagaaaacaaaacaagattatgactctaatt |
118 |
Q |
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| T |
41167048 |
acaaggcaaacctctatgtggatgatcaggaaatccagaaggagcagcaactgcaatatttcacatttttagaaaacaaaacaagattatgactctaatt |
41166949 |
T |
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| Q |
119 |
ttctactnnnnnnn-taatcatgactctcattttgaacatacaaaacagagcaaaaaacagagtttctcacctgagaattcatccaagacaaggaaagga |
217 |
Q |
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| T |
41166948 |
ttctactaaaaaaaataatcatgactctcattttgaacatacaaaacagagcaaaaaacagagtttctcacctgagaattcatccaagacaaggaaagga |
41166849 |
T |
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| Q |
218 |
tcaaagtacttgagctcaaatctaaacaaacccagatgatgaagaaaaccaatcaattcaaaaggatcaaatccaaaacatttaatgcagtttatatgta |
317 |
Q |
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| T |
41166848 |
tcaaagtacttgagctcaaatctaaacaaacccagatgatgaagaaaaccaatcaattcaaaaggatcaaatccaaaacatttaatgcagtttatatgta |
41166749 |
T |
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| Q |
318 |
aatttaacacctttgcctcaatgttcatgattgaaag-nnnnnnnnnctatacaagatttttaaaatttatttattttcatttacgtgacacactcctat |
416 |
Q |
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| T |
41166748 |
aatttaacacctttgcctcaatgttcatgattgaaagaaaaaaaaaactatacaagatttttaaaatttatttattttcatttacgtgacacactcctat |
41166649 |
T |
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| Q |
417 |
agtatatataaaaagtatgaacgtattaagtcacgttttg |
456 |
Q |
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| T |
41166648 |
agtatatataaaaagtatgaacgtattaagtcacgttttg |
41166609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 559 - 598
Target Start/End: Complemental strand, 41166509 - 41166470
Alignment:
| Q |
559 |
tttgttggactgcactttgaattaattaccttcctatgct |
598 |
Q |
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| T |
41166509 |
tttgttggactgaactttgaattaattaccttcctatgct |
41166470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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