View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18733_low_4 (Length: 481)
Name: NF18733_low_4
Description: NF18733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18733_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 43736396 - 43736860
Alignment:
| Q |
1 |
acggttaactatacgagcgagtcgcgttcatcatgaaaaagaggcctcttaggtgcagaatccaatcctcaacaaattgttcactcaataatagtcatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |
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| T |
43736396 |
acggttaactatacgagcgagtcgcgttcatcatgaaaaagaggcctcttaggtgcagaatccaatccacaacaaattgttaacttaataatagtcatgt |
43736495 |
T |
|
| Q |
101 |
catgctggtctggtctggtcaca--atattgtaattaattaaatctaaaactgtttgctaccaaaccaaaattagagaagaactcaatttggttagtact |
198 |
Q |
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| T |
43736496 |
catgctggtctggtctggtctggtcacaatgtaattaattaaatctaaaactgtttgctaccaaa-----attagagaagaactcaatttggttagtact |
43736590 |
T |
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| Q |
199 |
tggtatttcnnnnnnnnnnnnnnnnnnnggttctgccattcaaggtataacagttccatccatgaataaaatatatttgagcactatggttgcatcttgc |
298 |
Q |
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| T |
43736591 |
tggtatttcttttttttacttttttt--ggttctgccattcaaggtgtaacagttccatccatgaataaaatatatttgagcaccatggttgcatcttgc |
43736688 |
T |
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| Q |
299 |
aatttaagttactagtctctacttattatataagttatatatttgagacagaaaactgtgaaattgccaacttatagcattattttcttataattcagtt |
398 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43736689 |
aatttaagttactagtctctacttattatac--gttatatatttgagacagaaaactgtgaaattgccaacttatagcattattttcttataattcagtt |
43736786 |
T |
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| Q |
399 |
acaagcatcaaacacaaacacaaaaaccaatcaaaagaaatagaattttc-acttattttgaaagaactgatga |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43736787 |
acaagcatcaaacacaaacacaaaaaccaatcaaaagaaatagaattttcaacttattttgaaagaactgatga |
43736860 |
T |
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