View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18733_low_5 (Length: 400)

Name: NF18733_low_5
Description: NF18733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18733_low_5
NF18733_low_5
[»] chr1 (7 HSPs)
chr1 (1-400)||(24310202-24310604)
chr1 (1-400)||(24415782-24416166)
chr1 (1-325)||(24322842-24323158)
chr1 (4-337)||(24340472-24340796)
chr1 (4-337)||(24352837-24353161)
chr1 (120-226)||(24367334-24367440)
chr1 (42-85)||(24367472-24367515)
[»] chr5 (3 HSPs)
chr5 (1-242)||(42562006-42562235)
chr5 (139-227)||(29696401-29696489)
chr5 (45-84)||(29712161-29712200)
[»] chr4 (6 HSPs)
chr4 (48-232)||(49040869-49041046)
chr4 (120-244)||(48863401-48863525)
chr4 (139-232)||(49043994-49044087)
chr4 (150-227)||(48705198-48705275)
chr4 (48-84)||(48863573-48863609)
chr4 (1-80)||(48852993-48853069)
[»] chr3 (1 HSPs)
chr3 (151-232)||(47451717-47451798)
[»] chr6 (1 HSPs)
chr6 (192-244)||(21015978-21016030)


Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 24310604 - 24310202
Alignment:
Q  1 ttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310604 ttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaac 24310505  T
Q  101 catattcaatatcatcatcat---catctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatg 197  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310504 catattcaatatcatcatcatgatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatg 24310405  T
Q  198 acgaatagccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310404 acgaatagccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactc 24310305  T
Q  298 acaatttcgttgcacacattagctctcattgaaaaaatccaaatgcgagatagcacatcatgtgagtttggaatacaatcataggatactaaaactacca 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24310304 acaatttcgttgcacacattagctctcattgaaaaaatccaaatgcgagatagcacatcatgtgagtatggaatacaatcataggatactaaaactacca 24310205  T
Q  398 agt 400  Q
    |||    
T  24310204 agt 24310202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 24416166 - 24415782
Alignment:
Q  1 ttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaac 100  Q
    |||||||||||||||||||||||||||||| ||||||    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |    
T  24416166 ttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagacc 24416067  T
Q  101 catattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacg 200  Q
     | |||||||         ||||  |||||||||||| ||||||||| |||||||  ||||||||||||   ||| ||   | ||   ||  ||||||||    
T  24416066 aaaattcaat---------atcacttgggagaggaatctctagaagtttcctttccgttaaatgaaaggctgcaacaaagaaatc---tatctcatgacg 24415979  T
Q  201 aatagccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaa------agctcactataaaaaggtaaatgtgcagga 294  Q
     | ||| ||||| |||||||||||||||||||| ||||||||||||| |||| || ||  ||||      | |||| |   | |||| ||||| | ||||    
T  24415978 gaaagctaaccaatgaatagccccattgaagaccgactctaccacaggataatcagaaccagaacacgggacctcaat---acaaggcaaatgggtagga 24415882  T
Q  295 ctcacaatttcgttgcacacattagctctcattgaaaaaatccaaatgcgagatagcacatcatgtgagtttggaatacaatcataggatactaaaacta 394  Q
    |||||||||||||| |||||||||||||||| ||| |||||||  | ||||||||||||||||| ||||||||||||      |||||||||| ||||||    
T  24415881 ctcacaatttcgttccacacattagctctcaatgagaaaatcctcaagcgagatagcacatcatctgagtttggaat------ataggatactgaaacta 24415788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 24323158 - 24322842
Alignment:
Q  1 ttgtattctttcatcaccca----tatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtc 96  Q
    ||||||||||||||||||||    ||||||||||||| ||  ||||  || ||||||||||||| |||||||||||||||||||||||| | ||||| ||    
T  24323158 ttgtattctttcatcacccacccatatatcaactttacccaagtcctccaaaacccatagactgggaaatcctctaaatacccataaaccataatctttc 24323059  T
Q  97 gaaccatattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcat 196  Q
    ||| |||   ||||||||||         | ||| |||||| |||| || | | ||||| |||| || ||||| |||| ||| ||||||   | |||||     
T  24323058 gaaacat---caatatcatc---------taggaaaggaatctctacaaattttctttccattagatcaaaggcaacagtaagatactcatgtgcatcag 24322971  T
Q  197 gacgaatagccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcacta-taaaaaggtaaatgtgcaggac 295  Q
    |||  | ||||||||||||||||||||| |||||||| |||||||||||||||||||  || |||||||| | ||||  ||||||| ||||||| |||||    
T  24322970 gacttaaagccaaccagtgaatagccccgttgaagaccgactctaccacagaataagtgaagggagaaag-ttactacaaaaaaggcaaatgtgtaggac 24322872  T
Q  296 tcacaatttcgttgcacacattagctctca 325  Q
     |||||||||||| ||| ||||||||||||    
T  24322871 ccacaatttcgttccacgcattagctctca 24322842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 24340796 - 24340472
Alignment:
Q  4 tattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccat 103  Q
    ||||||||||| ||||| ||||||||  ||||||| |||  ||||||||||||||| |||||||||||| |||||||||||| |||| | ||  ||||||    
T  24340796 tattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccat 24340697  T
Q  104 attcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaat 203  Q
      ||||          |||||||||||||||||| |||| |||| ||||||| | ||| | ||||| ||||| || ||| ||   |  ||||| |   |     
T  24340696 ggtcaa---------aatcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaa 24340606  T
Q  204 agccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactcacaatt 303  Q
    |||||||||||||||||| || |||||||| |||||||| |  | |||| |||| |||||   || |||| ||||||| ||||| | ||| |||||||||    
T  24340605 agccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaagggagaggacttactacaaaaaggcaaatgggtagggctcacaatt 24340506  T
Q  304 tcgttgcacacattagctctcattgaaaaaatcc 337  Q
    ||||| ||| |||||||||||| ||| |||||||    
T  24340505 tcgttccacgcattagctctcaatgagaaaatcc 24340472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 24353161 - 24352837
Alignment:
Q  4 tattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccat 103  Q
    ||||||||||| ||||| ||||||||  ||||||| |||  ||||||||||||||| |||||||||||| |||||||||||| |||| | ||  ||||||    
T  24353161 tattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccat 24353062  T
Q  104 attcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaat 203  Q
      ||||          |||||||||||||||||| |||| |||| ||||||| | ||| | ||||| ||||| || ||| ||   |  ||||| |   |     
T  24353061 ggtcaa---------aatcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaa 24352971  T
Q  204 agccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactcacaatt 303  Q
    |||||||||||||||||| || |||||||| |||||||| |  | |||| |||| |||||   || |||| ||||||| ||||| | ||| |||||||||    
T  24352970 agccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaagggagaggacttactacaaaaaggcaaatgggtagggctcacaatt 24352871  T
Q  304 tcgttgcacacattagctctcattgaaaaaatcc 337  Q
    ||||| ||| |||||||||||| ||| |||||||    
T  24352870 tcgttccacgcattagctctcaatgagaaaatcc 24352837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 24367440 - 24367334
Alignment:
Q  120 atcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaata 219  Q
    |||| ||||||||||||| || |||||| ||||||| |||||| |||||| |||||||||||   | | || ||||| ||||| || |||||||||||||    
T  24367440 atcaactgggagaggaatatcgagaagtttcctttccattaaaagaaaggcaacaataacattgacacgtatatcataacgaaaagtcaaccagtgaata 24367341  T
Q  220 gccccat 226  Q
    |||||||    
T  24367340 gccccat 24367334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 24367515 - 24367472
Alignment:
Q  42 cctcataacccatagactgagaaatcctctaaatacccataaac 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  24367515 cctcaaaacccatagactgagaaatcctctaaatacccataaac 24367472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42562006 - 42562235
Alignment:
Q  1 ttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaac 100  Q
    ||||||||||||||||||||||||||||| |||||   |||||||| || |||||||||||||||||||||||||||||| |||| |||| || | |||     
T  42562006 ttgtattctttcatcacccatatatcaacattatc---gtccctcaaaatccatagactgagaaatcctctaaatacccaaaaaccacaacctttggaat 42562102  T
Q  101 catattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacg 200  Q
     ||| | |||||||        || ||| ||| |||| ||||||||| |||||||  |||||||||||| |||||||||||  ||  ||| |||||||||    
T  42562103 tataattaatatca--------at-tggaagaagaatctctagaagtttcctttccgttaaatgaaaggcaacaataacatggtcatatatatcatgacg 42562193  T
Q  201 aatagccaaccagtgaatagccccattgaagacggactctac 242  Q
    || |||||||||||||||||||||||||||||  ||||||||    
T  42562194 aagagccaaccagtgaatagccccattgaagaacgactctac 42562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 29696489 - 29696401
Alignment:
Q  139 tctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccatt 227  Q
    ||||||||| ||||||||||||||||||||| ||||||||||  |    ||| ||||| ||||| ||||||||||||||||||||||||    
T  29696489 tctagaagtttcctttcaattaaatgaaaggcaacaataacaggcattgatatatcattacgaaaagccaaccagtgaatagccccatt 29696401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 29712161 - 29712200
Alignment:
Q  45 cataacccatagactgagaaatcctctaaatacccataaa 84  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  29712161 catatcccatagactgagacatcctctaaatacccataaa 29712200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 49040869 - 49041046
Alignment:
Q  48 aacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatcatctgggagaggaatttctagaagt 147  Q
    |||||||||||||||||||||| ||||||||||||||  || |||  | ||| ||| ||||||||||||         ||||||||| ||   |||||||    
T  49040869 aacccatagactgagaaatcctttaaatacccataaatcacgatcattagaatcattttcaatatcatc---------tgggagaggtatcaatagaagt 49040959  T
Q  148 atcctttca-attaaatgaaagga-aacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 232  Q
      ||||||  |||||||||||||| ||||||||||||  | |||| ||||||||||| ||||||||| ||||||||||| |||||||    
T  49040960 tccctttcctattaaatgaaaggacaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaaga 49041046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 48863525 - 48863401
Alignment:
Q  120 atcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaata 219  Q
    ||||||| ||||||| ||   |||||||  ||||||  ||||| |||||| ||||||||||||  | | || ||||||||||| ||||||||| ||||||    
T  48863525 atcatctaggagaggtatcaatagaagttccctttccgttaaacgaaaggcaacaataacataaacacctatatcatgacgaaaagccaaccaatgaata 48863426  T
Q  220 gccccattgaagacggactctacca 244  Q
    ||||| ||||||| ||| |||||||    
T  48863425 gccccgttgaagaaggagtctacca 48863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 49043994 - 49044087
Alignment:
Q  139 tctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 232  Q
    |||| |||| ||||||||||||||| ||||| ||||||||||| |    ||| |||| || ||| |||||||||||||||||||||||| ||||    
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccattaaaga 49044087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 48705198 - 48705275
Alignment:
Q  150 cctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccatt 227  Q
    |||||| ||||||| ||||| ||||||||||| ||  | || ||||||||||  ||||||||| ||||||||||||||    
T  48705198 cctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagccccatt 48705275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 48863609 - 48863573
Alignment:
Q  48 aacccatagactgagaaatcctctaaatacccataaa 84  Q
    |||||||||||||||| ||||||||||||||||||||    
T  48863609 aacccatagactgagagatcctctaaatacccataaa 48863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 48853069 - 48852993
Alignment:
Q  1 ttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaataccca 80  Q
    |||||||||||||| |||||||| |||||| ||   || |||| ||| ||||||| ||| |||||| |||||||||||||    
T  48853069 ttgtattctttcatgacccatatttcaactgta---tcatcccccatgacccatatacttagaaattctctaaataccca 48852993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 47451717 - 47451798
Alignment:
Q  151 ctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 232  Q
    ||||| ||||||| ||| | | ||||||||| |  | ||| ||||||||||| ||||||||| | |||||||||||||||||    
T  47451717 ctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaaga 47451798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 21016030 - 21015978
Alignment:
Q  192 atcatgacgaatagccaaccagtgaatagccccattgaagacggactctacca 244  Q
    ||||||||||| ||||||||| |||||||||||||| || || ||| ||||||    
T  21016030 atcatgacgaaaagccaaccaatgaatagccccattaaaaaccgaccctacca 21015978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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