View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18733_low_6 (Length: 356)
Name: NF18733_low_6
Description: NF18733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18733_low_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 45385990 - 45386105
Alignment:
| Q |
241 |
acaatcactgcatgcttcccaattctcttgtacacatattcaaccaacattgctgaatcatacactcccttcacgcttaactcagagttcttcagattag |
340 |
Q |
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| T |
45385990 |
acaatcactgcatgcttcccaattctcttgtacatgtattcaaccaacattgctgaatcatacactcccttcacgcttacctcagagttcttcagattag |
45386089 |
T |
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| Q |
341 |
cttccacccattccac |
356 |
Q |
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| T |
45386090 |
cttccacccattccac |
45386105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 244 - 356
Target Start/End: Original strand, 45390144 - 45390256
Alignment:
| Q |
244 |
atcactgcatgcttcccaattctcttgtacacatattcaaccaacattgctgaatcatacactcccttcacgcttaactcagagttcttcagattagctt |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||| ||||||||||||| || || |
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| T |
45390144 |
atcactgcatgcttcccaattctcttgtacacatattcaaccaacattgctggatcatacacccccttcacacttacctcggagttcttcagatcagttt |
45390243 |
T |
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| Q |
344 |
ccacccattccac |
356 |
Q |
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| T |
45390244 |
ccaccaattccac |
45390256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 45385828 - 45385869
Alignment:
| Q |
80 |
gggtatgcatacatattgattggtggattaaagtagtgttca |
121 |
Q |
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| T |
45385828 |
gggtatgcatacatattgattggtggattaaagtagtgttca |
45385869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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