View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18733_low_8 (Length: 299)

Name: NF18733_low_8
Description: NF18733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18733_low_8
NF18733_low_8
[»] chr1 (5 HSPs)
chr1 (1-257)||(24309803-24310059)
chr1 (1-255)||(24322090-24322344)
chr1 (86-257)||(24340040-24340211)
chr1 (23-251)||(24366787-24367016)
chr1 (48-257)||(24415463-24415672)
[»] scaffold0508 (1 HSPs)
scaffold0508 (129-258)||(11887-12016)
[»] chr4 (34 HSPs)
chr4 (170-255)||(7904660-7904745)
chr4 (142-255)||(48862869-48862985)
chr4 (152-255)||(7771032-7771135)
chr4 (170-255)||(7774194-7774279)
chr4 (170-255)||(7877348-7877433)
chr4 (167-255)||(45372419-45372507)
chr4 (167-255)||(48891037-48891125)
chr4 (152-255)||(7789717-7789820)
chr4 (169-255)||(45366582-45366671)
chr4 (168-230)||(7765274-7765336)
chr4 (130-255)||(33134148-33134276)
chr4 (158-255)||(7238073-7238170)
chr4 (154-255)||(7907953-7908054)
chr4 (142-255)||(49041475-49041588)
chr4 (130-255)||(33133665-33133793)
chr4 (134-252)||(48870173-48870291)
chr4 (134-252)||(48885859-48885977)
chr4 (142-255)||(7822597-7822710)
chr4 (168-240)||(7786086-7786158)
chr4 (152-255)||(48148029-48148135)
chr4 (167-255)||(48156789-48156877)
chr4 (130-255)||(48170911-48171039)
chr4 (175-253)||(49044599-49044677)
chr4 (176-257)||(45385158-45385239)
chr4 (175-255)||(48735682-48735765)
chr4 (142-255)||(7800265-7800378)
chr4 (170-255)||(48875474-48875559)
chr4 (167-255)||(37827356-37827444)
chr4 (140-219)||(48852321-48852403)
chr4 (172-255)||(7813108-7813191)
chr4 (199-255)||(48902578-48902634)
chr4 (167-219)||(50251170-50251222)
chr4 (202-253)||(49048996-49049047)
chr4 (170-255)||(48898350-48898438)
[»] chr5 (6 HSPs)
chr5 (167-255)||(29695780-29695868)
chr5 (167-255)||(29712831-29712919)
chr5 (167-231)||(1812077-1812141)
chr5 (167-255)||(29687679-29687767)
chr5 (202-252)||(42562728-42562778)
chr5 (203-257)||(178645-178699)
[»] chr8 (6 HSPs)
chr8 (142-255)||(15348490-15348603)
chr8 (182-255)||(12199935-12200008)
chr8 (182-255)||(12444363-12444436)
chr8 (178-255)||(12194929-12195006)
chr8 (178-255)||(12439357-12439434)
chr8 (153-255)||(4032264-4032366)
[»] chr3 (4 HSPs)
chr3 (152-255)||(11024884-11024987)
chr3 (175-255)||(11006332-11006412)
chr3 (167-255)||(47452269-47452357)
chr3 (152-255)||(11015872-11015975)
[»] chr6 (1 HSPs)
chr6 (166-253)||(21015406-21015493)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 24310059 - 24309803
Alignment:
Q  1 tctacatgaacctataactttaagatcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcagaagtaaacaatgaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310059 tctacatgaacctataactttaagatcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcagaagtaaacaatgaatct 24309960  T
Q  101 aaagctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24309959 aaagctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaat 24309860  T
Q  201 cagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24309859 cagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaa 24309803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 24322344 - 24322090
Alignment:
Q  1 tctacatgaacctataactttaagatcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcagaagtaaacaatgaatct 100  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||   ||||||||||| || |||| |||||||||||||||  || ||||||||||||    
T  24322344 tctacatgaacctctaactttaagatcaaaataagatttaggaagcaaaaaattagggtccagtagaacaggagcagaatcagtggtgaacaatgaatct 24322245  T
Q  101 aaagctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaat 200  Q
    |||| |||||||||||||| ||||||| ||||||  || ||||||| ||| |||||||||| || ||||    |||| ||||||||||||||  ||| ||    
T  24322244 aaaggtatagatcgaaattgaggaatttctgttacaaacagaattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttgcaaaacgaggat 24322145  T
Q  201 cagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
      |||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  24322144 ttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagactt 24322090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 86 - 257
Target Start/End: Complemental strand, 24340211 - 24340040
Alignment:
Q  86 gtaaacaatgaatctaaagctatagatcgaaattcaggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaat 185  Q
    |||||||| ||||||| ||||||| ||||||| |||||| || |||| | ||||||||||||| | |||||||||| || ||||| |||||| |||||||    
T  24340211 gtaaacaacgaatctacagctatatatcgaaactcaggagttgctgtcaggaagagaattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaat 24340112  T
Q  186 ttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaa 257  Q
    |||||||||||  |||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||    
T  24340111 ttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaa 24340040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 24367016 - 24366787
Alignment:
Q  23 agatcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcagaagtaaacaatgaatctaaa-gctatagatcgaaattca 121  Q
    |||||||||| |||||| |||||   |||| ||||||||| || ||  |||| ||||||| | |||||||||||||||||| ||||||||| |||||| |    
T  24367016 agatcaaaatcagatttgggaagcaaaaaaatagggttcagtaaagttggagaagaatcatatgtaaacaatgaatctaaaagctatagattgaaattga 24366917  T
Q  122 ggaattcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccata 221  Q
     || ||  ||| | ||| ||||||  | |  ||||||||| || |||||  ||||| |||||||||||||||| || ||  ||||||||||||||||||     
T  24366916 tgatttggtgtcaagaacagaatttgatgattgtgtgttgcagcagtaatctgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatg 24366817  T
Q  222 acttacaaacggatttgaaacgaataagag 251  Q
    |||| |||||  ||||||||||||| ||||    
T  24366816 acttgcaaacacatttgaaacgaatcagag 24366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 257
Target Start/End: Complemental strand, 24415672 - 24415463
Alignment:
Q  48 caaaattagggttcaatagagcaggagcagaatcagaagt-aaacaatgaatctaaagctatagatcgaaattcaggaattcctgttatgaagagaattc 146  Q
    ||||||||||||| | || || ||||||||||| |   || |||||||||||| |||||||| ||||||| ||||| | |  |||||| ||| |||||||    
T  24415672 caaaattagggttaagtaaagtaggagcagaatgatcggtaaaacaatgaatccaaagctatggatcgaagttcagaagtctctgttacgaacagaattc 24415573  T
Q  147 tacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaat 246  Q
     ||| |||||||||| || |||||  ||||| ||||||||||||||    | ||  || ||||||||||||||  |||||| |||| |||||||||||||    
T  24415572 gacgagtgtgtgttgcagcagtaatctgaaactgtgaatttgcaaa-actggatttgaaataagagaaaaccaagacttacgaacgcatttgaaacgaat 24415474  T
Q  247 aagagacttaa 257  Q
    |||||||||||    
T  24415473 aagagacttaa 24415463  T

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Target: scaffold0508 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 129 - 258
Target Start/End: Complemental strand, 12016 - 11887
Alignment:
Q  129 ctgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttaca 228  Q
    |||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  12016 ctgttaagaacagaatcctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttaca 11917  T
Q  229 aacggatttgaaacgaataagagacttaat 258  Q
    ||||||||||||||| ||||||||||||||    
T  11916 aacggatttgaaacggataagagacttaat 11887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 7904745 - 7904660
Alignment:
Q  170 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagactt 7904660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 48862985 - 48862869
Alignment:
Q  142 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatc---agagataagagaaaaccataacttacaaacggatttg 238  Q
    ||||||| ||||||||||||  | |||||||||||||||||||||||||||||||| |||   ||||||||||||||||||  |||| |||||| |||||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttg 48862886  T
Q  239 aaacgaataagagactt 255  Q
    |||||||||||||||||    
T  48862885 aaacgaataagagactt 48862869  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 7771135 - 7771032
Alignment:
Q  152 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagag 251  Q
    |||||||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||| |||||||||  |||||||    
T  7771135 gtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagag 7771036  T
Q  252 actt 255  Q
    ||||    
T  7771035 actt 7771032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 7774194 - 7774279
Alignment:
Q  170 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||||  |||||||| |||||||||||||    
T  7774194 agttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagactt 7774279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 7877433 - 7877348
Alignment:
Q  170 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    ||||||||||||||||||||||| |  | ||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||    
T  7877433 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagactt 7877348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 45372419 - 45372507
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||| ||||||||||||||||||||| |||| ||||||||||| |||||||||  ||||||||||  |||||||||| |||||||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagactt 45372507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 48891125 - 48891037
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||| ||||||||||| |||| ||| |||| ||||||||||||  ||||||||||| |||||||||| |||||||||||    
T  48891125 gtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactt 48891037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 7789820 - 7789717
Alignment:
Q  152 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagag 251  Q
    ||||||||||  || | ||||||||||||||||||| ||||||||| ||| ||||||| |||||||||  ||||||||||| |||||||||  |||||||    
T  7789820 gtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagag 7789721  T
Q  252 actt 255  Q
    ||||    
T  7789720 actt 7789717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 45366582 - 45366671
Alignment:
Q  169 aagttgaaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    ||||||||||||||||||||||||||| ||||||   |||||||||||||||||  ||||||||||| | |||||||| |||||||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagactt 45366671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 7765336 - 7765274
Alignment:
Q  168 taagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaa 230  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaa 7765274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 255
Target Start/End: Original strand, 33134148 - 33134276
Alignment:
Q  130 tgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataactta 226  Q
    ||||||||| | |||| |||  ||||||||||| |  || | |||||||||||||||||||||||||| ||||   |||||||||||||| ||   ||||    
T  33134148 tgttatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggctta 33134247  T
Q  227 caaacggatttgaaacgaataagagactt 255  Q
    |||||| ||||||||||||||||||||||    
T  33134248 caaacgcatttgaaacgaataagagactt 33134276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 7238073 - 7238170
Alignment:
Q  158 gttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||| ||| ||| |||| ||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||  |||||||||  |||||||||||    
T  7238073 gttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagactt 7238170  T

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Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 7908054 - 7907953
Alignment:
Q  154 gtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagac 253  Q
    |||| ||| ||| |||||||||||||||||||||||||| || | | |||||||||||||||||||| |||||| ||| || ||||||||  ||||||||    
T  7908054 gtgttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagac 7907955  T
Q  254 tt 255  Q
    ||    
T  7907954 tt 7907953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 255
Target Start/End: Original strand, 49041475 - 49041588
Alignment:
Q  142 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 241  Q
    |||||||||| |||| ||||  |  ||||||| |||||| ||||||||||| || | |||||||||||||||||||||  |||| |||||| ||||||||    
T  49041475 aattctacggttgtgggttgggggggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaa 49041574  T
Q  242 cgaataagagactt 255  Q
    | ||||||||||||    
T  49041575 caaataagagactt 49041588  T

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Target: chr4; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 33133793 - 33133665
Alignment:
Q  130 tgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataactta 226  Q
    ||||||||| | |||| |||  ||||||||||| |  || | ||||||||| |||||||||||||||  ||||   ||||||||||||||||| | ||||    
T  33133793 tgttatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagctta 33133694  T
Q  227 caaacggatttgaaacgaataagagactt 255  Q
    |||| | ||||||||||||||||||||||    
T  33133693 caaatgaatttgaaacgaataagagactt 33133665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 48870291 - 48870173
Alignment:
Q  134 atgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacgg 233  Q
    ||||| ||||| ||||| ||||||||||  |  || || ||||||||||||||||||||  | | ||| ||||||||| |||||||  |||||||||||     
T  48870291 atgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgc 48870192  T
Q  234 atttgaaacgaataagaga 252  Q
    |||||||||||||||||||    
T  48870191 atttgaaacgaataagaga 48870173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 48885977 - 48885859
Alignment:
Q  134 atgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacgg 233  Q
    ||||| ||||| ||||| ||||||||||  |  || || ||||||||||||||||||||  | | ||| ||||||||| |||||||  |||||||||||     
T  48885977 atgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgc 48885878  T
Q  234 atttgaaacgaataagaga 252  Q
    |||||||||||||||||||    
T  48885877 atttgaaacgaataagaga 48885859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 7822710 - 7822597
Alignment:
Q  142 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 241  Q
    ||||||||| || ||||||| ||  || | |||||| ||||||||||||||||| | |||||||||||||||||||||| | ||||||||  | ||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaa 7822611  T
Q  242 cgaataagagactt 255  Q
    || |||||| ||||    
T  7822610 cgtataagatactt 7822597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 7786158 - 7786086
Alignment:
Q  168 taagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaa 240  Q
    ||||||| ||||||||||||||||| |||| ||||||||||| ||||| ||||| |||||||||| |||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaa 7786086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 48148029 - 48148135
Alignment:
Q  152 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataacttacaaacggatttgaaacgaataa 248  Q
    |||||| ||||||  || |||| ||||||||||||||| ||||||| ||||   |||||||||||||||||  ||||||| ||  |||||||||||||||    
T  48148029 gtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataa 48148128  T
Q  249 gagactt 255  Q
    |||||||    
T  48148129 gagactt 48148135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 48156789 - 48156877
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||| ||||||||| ||||||||||| |||| ||| |||||||||||||||||  ||||||||||| | |||||||| | |||||||||    
T  48156789 gtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagactt 48156877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 255
Target Start/End: Original strand, 48170911 - 48171039
Alignment:
Q  130 tgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatc---agagataagagaaaaccataactta 226  Q
    ||||||||| | |||| |||| ||||||||| | |  |||| ||||||||| |||||||||||||||| |||   ||||||||||| ||||||  |||||    
T  48170911 tgttatgaacataattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagactta 48171010  T
Q  227 caaacggatttgaaacgaataagagactt 255  Q
    |||||  |||||||||| | |||||||||    
T  48171011 caaacacatttgaaacgtagaagagactt 48171039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 49044599 - 49044677
Alignment:
Q  175 aaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagac 253  Q
    ||||||||||||||||||||| |  | ||||||||||||||||||||||||||||||  | |||||||| | |||||||    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagac 49044677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 45385158 - 45385239
Alignment:
Q  176 aaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaa 257  Q
    |||||||||| ||||||||| | ||| ||||  |||||||||||  |||||||||||||||||||||| || ||||||||||    
T  45385158 aaatgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaa 45385239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 48735682 - 48735765
Alignment:
Q  175 aaaatgtgaatttgcaaagtgagaatca---gagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||||||| | || ||||   |||||||||||||||||  ||||||||||  ||||||||||||||||||||||    
T  48735682 aaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagactt 48735765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 7800378 - 7800265
Alignment:
Q  142 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 241  Q
    ||||||||| || ||||||| ||  || | |||||| ||||||||||||||| | | |||||||| ||||||||||||| | ||||||||  | ||||||    
T  7800378 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaa 7800279  T
Q  242 cgaataagagactt 255  Q
    || |||||| ||||    
T  7800278 cgtataagatactt 7800265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 48875559 - 48875474
Alignment:
Q  170 agttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    ||||||||||||||||||| ||| || |  || ||||| |||||||||||  |||| |||||| ||||||||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 37827356 - 37827444
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    ||||||||||||||||||||||||||||  | || ||| |||||||  |||||| ||||||||||| || | ||||  |||||||||||    
T  37827356 gtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagactt 37827444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 48852403 - 48852321
Alignment:
Q  140 agaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaa---tcagagataagagaaaacca 219  Q
    ||||||||||| ||||||||||| | ||||| || |||||| |||||||||||||||| |   | ||||||||||||||||||    
T  48852403 agaattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaacca 48852321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 7813191 - 7813108
Alignment:
Q  172 ttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||| ||||| ||||||||||| |  ||||||||||||||||||||| | ||||||||  | |||||||| |||||| ||||    
T  7813191 ttgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatactt 7813108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 48902634 - 48902578
Alignment:
Q  199 atcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||| ||||||||||||||  ||||||||||  ||||||||||||| ||||||||    
T  48902634 atcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactt 48902578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 50251170 - 50251222
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaacca 219  Q
    ||||||||||||||  |||||||| |||| | |||||||||||||||||||||    
T  50251170 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 50251222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 49048996 - 49049047
Alignment:
Q  202 agagataagagaaaaccataacttacaaacggatttgaaacgaataagagac 253  Q
    ||||||||||||||||||||||||||||||  | |||||||| | |||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagac 49049047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 48898438 - 48898350
Alignment:
Q  170 agttgaaaatgtgaatttgcaaagtgagaatc---agagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||||||||||||||| | |||   ||||||||| || |||||  ||||||||||  | ||||||||  ||||||||||    
T  48898438 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagactt 48898350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 29695868 - 29695780
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||||||||||||||||||||  | ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  29695868 gtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagactt 29695780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 29712831 - 29712919
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    ||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  29712831 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagactt 29712919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 1812141 - 1812077
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaac 231  Q
    ||||||||||||||  ||||||||||||| | ||  |||||||||||||||||||||||||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaac 1812077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 29687767 - 29687679
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||| ||||||||||||||||  | ||| || |||||||||||  ||||||||||  | ||||| || |||||||||||    
T  29687767 gtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagactt 29687679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 42562728 - 42562778
Alignment:
Q  202 agagataagagaaaaccataacttacaaacggatttgaaacgaataagaga 252  Q
    |||||| |||||||||||  ||||||||||| |||||||||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagaga 42562778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 178699 - 178645
Alignment:
Q  203 gagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaa 257  Q
    ||||| ||||| |||||  ||||||||||  ||||||||||||||||||||||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaa 178645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 15348603 - 15348490
Alignment:
Q  142 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 241  Q
    ||||||||| ||||||||||  |  |||| |||||||||||||||||| |||| || |||||||||||||||||||||  ||||||||||| ||||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  242 cgaataagagactt 255  Q
    || |||||||||||    
T  15348503 cgtataagagactt 15348490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 12200008 - 12199935
Alignment:
Q  182 gaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||  | |||||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagactt 12199935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 12444436 - 12444363
Alignment:
Q  182 gaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||  |||||||||  | |||||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagactt 12444363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 12195006 - 12194929
Alignment:
Q  178 atgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||||||| | ||||||||||||||| |||||| ||||||||| | |||||||||  | |||||||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagactt 12194929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 12439434 - 12439357
Alignment:
Q  178 atgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||||||||||||||| | ||||||||||||||| |||||| ||||||||| | |||||||||  | |||||||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagactt 12439357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 4032264 - 4032366
Alignment:
Q  153 tgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagaga 252  Q
    ||||||||  ||| |||| ||||||||| |||||||||||||||| |||||| |||||||  |||||  | ||||||||  | |||||||| ||||||||    
T  4032264 tgtgtgttttagaggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagaga 4032363  T
Q  253 ctt 255  Q
    |||    
T  4032364 ctt 4032366  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 11024884 - 11024987
Alignment:
Q  152 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagag 251  Q
    |||||||||| ||  | ||||| |||||| || |||||||||| |  ||||||||||||||  |||||| ||||||||||| |||||||||| || ||||    
T  11024884 gtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagag 11024983  T
Q  252 actt 255  Q
    ||||    
T  11024984 actt 11024987  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 11006332 - 11006412
Alignment:
Q  175 aaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    |||||| || ||||||||||||| ||||||||||||||  |||||| ||||||||||  | |||||||| ||||| |||||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgactt 11006412  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 47452269 - 47452357
Alignment:
Q  167 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 255  Q
    ||||||| ||||||||  ||||||||| ||| |||||||||||||||||||||| ||||| ||| | | ||||| || | |||||||||    
T  47452269 gtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagactt 47452357  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 11015872 - 11015975
Alignment:
Q  152 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagag 251  Q
    |||||||||| ||  | ||||| |||||| || |||||||||| |  ||||||||||||||  ||| || ||||||||||| |||||||||| || ||||    
T  11015872 gtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagag 11015971  T
Q  252 actt 255  Q
    ||||    
T  11015972 actt 11015975  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 21015493 - 21015406
Alignment:
Q  166 agtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagac 253  Q
    ||||| || |||||||||| |||||||||| |  | |||||||||||||||| |||||||||||||  | |||||||| | |||||||    
T  21015493 agtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagac 21015406  T

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