View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18734_high_10 (Length: 304)
Name: NF18734_high_10
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_high_10 |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0302 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 21934469 - 21934742
Alignment:
| Q |
20 |
gtctctacaatcctaaagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcaccca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21934469 |
gtctctacaatcctaaagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcaccta |
21934568 |
T |
|
| Q |
120 |
atctccattctgttgattgtacacaacttgatgaagcttggaatgttattctcaagtctctgttaaccctaacatcgtcgaagtcgtgatggggagcaaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21934569 |
atctccattctgttgattgtacacaacttgatgaagcttggaatgttattctcaagtctctgttaaccctaacatcgtcgaagtcatgatggggagcaaa |
21934668 |
T |
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| Q |
220 |
tggtgtgaacttgacaaccagtccgcgtcctaagccagtgagctcaagaccaacatgtaaagggcatgattcat |
293 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21934669 |
tggtgtgaatttgacaaccagcccgcgtcctaagccagtgagctcaagaccaacatgtaaagggcatgattcat |
21934742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 21370574 - 21370775
Alignment:
| Q |
18 |
cagtctctacaatcctaaagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcacc |
117 |
Q |
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|||| ||||||||| |||||||||||||| | |||||| ||| |||||||| | ||| |||||| || || |||||| | | | ||| ||||||| |
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| T |
21370574 |
cagtttctacaatcttaaagaagttaccaaaggatccaactgtaccactatctcttccaatgataacgaatctccttccagttgttgcgtccctctcacc |
21370673 |
T |
|
| Q |
118 |
caatctccattctgttgattgtacacaacttgatgaagcttggaatgttattctcaagtctctgttaaccctaacatcgtcgaagtcgtgatggggagca |
217 |
Q |
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|||| ||||||||||||||||| ||||| | |||||||||||| | | | | ||||||||||||| ||| || |||||| ||||||||||||||| |
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| T |
21370674 |
caatttccattctgttgattgtccacaagccgtggaagcttggaatatcacttttaagtctctgttaagcctcacctcgtcgtcatcgtgatggggagca |
21370773 |
T |
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| Q |
218 |
aa |
219 |
Q |
| |
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|| |
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|
| T |
21370774 |
aa |
21370775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 21403822 - 21403940
Alignment:
| Q |
26 |
acaatcctaaagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcacccaatctcc |
125 |
Q |
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|||||||||||||||||||||||||||||| ||| | |||| | || |||||||| |||||||||||| || | | ||| |||||||||| |||| |
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| T |
21403822 |
acaatcctaaagaagttaccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctcc |
21403921 |
T |
|
| Q |
126 |
attctgttgattgtacaca |
144 |
Q |
| |
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|||||||||| ||| |||| |
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| T |
21403922 |
attctgttgactgtccaca |
21403940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 21798314 - 21798432
Alignment:
| Q |
26 |
acaatcctaaagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtctttctcacccaatctcc |
125 |
Q |
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|||||||||||||||||||||||||||||| ||| | |||| | || |||||||| |||||||||||| || | | ||| |||||||||| |||| |
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| T |
21798314 |
acaatcctaaagaagttaccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctcc |
21798413 |
T |
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| Q |
126 |
attctgttgattgtacaca |
144 |
Q |
| |
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|||||||||| ||| |||| |
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| T |
21798414 |
attctgttgactgtccaca |
21798432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 34106 - 33990
Alignment:
| Q |
82 |
aatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttggaatgttattctcaagtctctg |
181 |
Q |
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||||||||| ||||||||| | | |||||||| ||||||||||| |||||||| || ||||||||| || | | ||||||||| ||||||||||||| |
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| T |
34106 |
aatcaacctccttccactcgttgcatctttctcgcccaatctccagtctgttgactgcccacaacttgtggaggttaggaatgttactctcaagtctctg |
34007 |
T |
|
| Q |
182 |
ttaaccctaacatcgtc |
198 |
Q |
| |
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|||| |||||||||||| |
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| T |
34006 |
ttaagcctaacatcgtc |
33990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 14988 - 15145
Alignment:
| Q |
74 |
ccagtgataatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttggaatgttattctca |
173 |
Q |
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||||||| |||||| || |||||||| | | ||||||||||| |||||||| |||||||| || ||||||||| || | | ||||||| | ||||| |
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| T |
14988 |
ccagtgacaatcaatctccttccacttgtagcatctttctcacctaatctccagtctgttgactgcccacaacttgtggatgttaggaatgtaactctca |
15087 |
T |
|
| Q |
174 |
agtctctgttaaccctaacatcgtcgaagtcgtgatggggagcaaatggtgtgaactt |
231 |
Q |
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|||||||||||| |||||||| ||| || ||||| |||||||| || |||||||| |
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| T |
15088 |
agtctctgttaagcctaacattgtcatcatcatgatgaggagcaaaaggagtgaactt |
15145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 25996 - 26150
Alignment:
| Q |
77 |
gtgataatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttggaatgttattctcaagt |
176 |
Q |
| |
|
|||| ||||||||| |||||||| | | ||||||||||| |||||||| |||||||| || ||||||||| || | | ||||||| | |||||||| |
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| T |
25996 |
gtgacaatcaacctccttccacttgtagcatctttctcacctaatctccagtctgttgactgcccacaacttgtggatgttaggaatgtaactctcaagt |
26095 |
T |
|
| Q |
177 |
ctctgttaaccctaacatcgtcgaagtcgtgatggggagcaaatggtgtgaactt |
231 |
Q |
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||||||||| || ||||| ||| || ||||| |||||||| || |||||||| |
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| T |
26096 |
ctctgttaagcccaacattgtcatcatcatgatgaggagcaaaaggagtgaactt |
26150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 4286855 - 4286742
Alignment:
| Q |
82 |
aatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttggaatgttattctcaagtctctg |
181 |
Q |
| |
|
||||| ||| ||||||||| | | ||| ||||||||||| ||||| ||||| || || |||||| || || |||||||||||| ||||||||||||| |
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| T |
4286855 |
aatcagcctccttccactcgttgcgtccttctcacccaacctccaatctgtcgactgcccacaacctgtgaaaccttggaatgttactctcaagtctctg |
4286756 |
T |
|
| Q |
182 |
ttaaccctaacatc |
195 |
Q |
| |
|
|||| ||| ||||| |
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| T |
4286755 |
ttaagcctcacatc |
4286742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 4295326 - 4295213
Alignment:
| Q |
82 |
aatcaaccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagcttggaatgttattctcaagtctctg |
181 |
Q |
| |
|
||||| ||| ||||||||| | | ||| ||||||||||| ||||| ||||| || || |||||| || || |||||||||||| ||||||||||||| |
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| T |
4295326 |
aatcagcctccttccactcgttgcgtccttctcacccaacctccaatctgtcgactgcccacaacctgtgaaaccttggaatgttactctcaagtctctg |
4295227 |
T |
|
| Q |
182 |
ttaaccctaacatc |
195 |
Q |
| |
|
|||| ||| ||||| |
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|
| T |
4295226 |
ttaagcctcacatc |
4295213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 30902687 - 30902756
Alignment:
| Q |
88 |
ccttcttccactcttggtgtctttctcacccaatctccattctgttgattgtacacaacttgatgaagct |
157 |
Q |
| |
|
||||||||||||||| || ||| | ||||| ||| ||||||| || |||||||||||| |||| |||||| |
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|
| T |
30902687 |
ccttcttccactcttagtatctctatcacctaatttccattcagtggattgtacacaaattgaagaagct |
30902756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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