View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18734_high_12 (Length: 299)
Name: NF18734_high_12
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 36281840 - 36282044
Alignment:
| Q |
1 |
acttttagaggcataactttataccaaattatgtgtgacagaatatcaaagttagaatgttcaactctagtaagattctgataagcaccatttaccaaat |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
36281840 |
acttttaaaggcataactttataccaaattatgtgtgacagaatatcaaagttggaatattcaactctagtaagaatctgataagcaccctttaccaaat |
36281939 |
T |
|
| Q |
101 |
aaccatcaatggagttttataaccaaactcgtttagttgtcacattgtcctgcnnnnnnnntgttatttaacaaagaaacacattgttccatttaatcct |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||| ||||||||| || |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
36281940 |
aaccatcaatgaagttttataaccaaactcgtttatctgtcacgttgtcctgc-aaaaaaatgatatttaacaaagaaccacattgtttcatttaatcct |
36282038 |
T |
|
| Q |
201 |
ctccca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
36282039 |
ctccca |
36282044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 36282071 - 36282118
Alignment:
| Q |
233 |
cctctccaccgccatcatgcctctccacccccaacctagcctcttcat |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36282071 |
cctctccaccgccatcatgcctctccacccccaacatagcctcttcat |
36282118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 32661749 - 32661787
Alignment:
| Q |
162 |
tgttatttaacaaagaaacacattgttccatttaatcct |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
32661749 |
tgttatctaacaaagaaacacattgttccaattaatcct |
32661787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University