View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18734_high_2 (Length: 427)
Name: NF18734_high_2
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 28783228 - 28782815
Alignment:
| Q |
1 |
agttccgtttgtattactgtgataaattagggttcagtgttgcaagtaatatatatagttccactccttgccttctttaatgtcatgattctaattattc |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783228 |
agttccgtttgtattactgtaataaattagggttcagtgttgcaagtaatatatatagttccactccttgccttctttaatgtcatgattctaattattc |
28783129 |
T |
|
| Q |
101 |
cccctacatgttcttattgtgtgtgtaaggaacttatatatacgaatgtagctaattaatattgttgtaatttgagttacagctggtaacaaatgacaaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783128 |
cccctacacgttcttattgtgtgtgtaaggaacttatatatacgaatgtagctaattaatattgttgtaatttgagttacagctggtaacaaatgacaaa |
28783029 |
T |
|
| Q |
201 |
ttcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactctttctcaaaccaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783028 |
ttcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactctttctcaaaccaat |
28782929 |
T |
|
| Q |
301 |
acggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaatacaaaagggattga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28782928 |
acggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaatacaaaagggattga |
28782829 |
T |
|
| Q |
401 |
tgggatctctgctc |
414 |
Q |
| |
|
|||||||||||||| |
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| T |
28782828 |
tgggatctctgctc |
28782815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 414
Target Start/End: Complemental strand, 28742222 - 28741995
Alignment:
| Q |
187 |
taacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactc |
286 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| ||| | ||||| | || ||||| |||||||||||||||| |||||||| |||| || || | |
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| T |
28742222 |
taacaaatgacagattcaagagtgttgagcacagagtactagcaaatactattggtccaagagtatctgttgcatcttttttcagggcaggtcctagagc |
28742123 |
T |
|
| Q |
287 |
tttctcaaaccaatacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaat |
386 |
Q |
| |
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||| | || ||||||||||||||| |||||||||||||||| ||||| | ||| | ||||| ||| || |||| | |||||||||||||||| |
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| T |
28742122 |
acaagaaaagctctatggacctataaaagaaattttatcagaagacaaccctccaagatatagagaaaccacttttacagattttgtagcctactacaat |
28742023 |
T |
|
| Q |
387 |
acaaaagggattgatgggatctctgctc |
414 |
Q |
| |
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|||||||| ||||||| ||||| |||| |
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| T |
28742022 |
gcaaaagggcttgatggcatctcagctc |
28741995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 28699598 - 28699494
Alignment:
| Q |
178 |
tacagctggtaacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcaga |
277 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || || | ||| ||||||| ||| ||||| ||| ||||||||||||| |||||||| |||| |
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|
| T |
28699598 |
tacagctgataacaaatgacaaattcaagagtgttgaacatagagtactggcaaatggcattggtccaagaatatctgttgcatgctttttcaaggcagg |
28699499 |
T |
|
| Q |
278 |
tctta |
282 |
Q |
| |
|
||||| |
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|
| T |
28699498 |
tctta |
28699494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 28699473 - 28699422
Alignment:
| Q |
303 |
ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa |
354 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||| ||||||| ||||||||||| |
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|
| T |
28699473 |
ggacctataacagaattattatcagaaaacaaccctcccagatacaaagaaa |
28699422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 28735098 - 28735000
Alignment:
| Q |
178 |
tacagctggtaacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcag |
276 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| || || | ||| ||||||| ||| ||||| ||| ||||||||||||| |||||||| |||| |
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|
| T |
28735098 |
tacagcttataacaaatgataaattcaagagtgttgaacatagagtactggcaaatgacattggtccaagaatatctgttgcatgctttttcaaggcag |
28735000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 354
Target Start/End: Original strand, 10769397 - 10769564
Alignment:
| Q |
187 |
taacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| | ||||| | | ||||| ||| |||||||||||||||||||| | | || || || |
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| T |
10769397 |
taacaaatgacaaattcaagagtgtggagcacagagttcttgcaaataatgttggtccaagaatatctgttgcatgttttttctgcaccggtcataggtc |
10769496 |
T |
|
| Q |
287 |
tttctcaaaccaatacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa |
354 |
Q |
| |
|
| |||||| | || ||||||||||| ||| | |||||||||||||||||||||| ||||| ||||| |
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|
| T |
10769497 |
atcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccatatacagagaaa |
10769564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 2034784 - 2034862
Alignment:
| Q |
303 |
ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctact |
381 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||| ||||||| ||||| ||| |||| || |||||||| |||| |
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| T |
2034784 |
ggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaacaacggtttctgattatgtagcttact |
2034862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 2055874 - 2055936
Alignment:
| Q |
321 |
ttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactac |
383 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| || | || ||||||||||||||| |
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|
| T |
2055874 |
ttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctactac |
2055936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 2048105 - 2048156
Alignment:
| Q |
303 |
ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa |
354 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
2048105 |
ggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaa |
2048156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 2059078 - 2059111
Alignment:
| Q |
321 |
ttatcagaagacaatcctcccaaatacaaagaaa |
354 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
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|
| T |
2059078 |
ttatcagaagacaatcctcccaaatacagagaaa |
2059111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 2052018 - 2052050
Alignment:
| Q |
322 |
tatcagaagacaatcctcccaaatacaaagaaa |
354 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
2052018 |
tatcagaagacaatcctcccaaatacagagaaa |
2052050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 48904947 - 48904896
Alignment:
| Q |
303 |
ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa |
354 |
Q |
| |
|
||||||||||| ||| | ||||| |||||||||||||||||||||| ||||| |
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|
| T |
48904947 |
ggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaa |
48904896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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