View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18734_high_3 (Length: 424)
Name: NF18734_high_3
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 22549564 - 22549969
Alignment:
| Q |
17 |
agttacaaatgcttaaaaacaattataatgataatgaactgttgcaccgataactagacatgagtgtttctcaagtttacagaactggtaaagtctacaa |
116 |
Q |
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| T |
22549564 |
agttacaaatgcttaaaaacaattaaaatgataatgaactattgcactgataactagacatgagtgtttctcaagtttacagaactggtaaagtctacaa |
22549663 |
T |
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| Q |
117 |
tttgctttagatgcaatctttttctaaattaccaaaacataatgtaaatttgctttggatagcactaatagttgttttatggttcaatctcaaatgtaaa |
216 |
Q |
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| T |
22549664 |
tttgctttagatacaatctttttctaaattaccaaaacataatgtaaatttgctttggatagcactaatagttgttttatggttcaatctcaaatgtaaa |
22549763 |
T |
|
| Q |
217 |
taacaagcattttaagataatgacattgacatttgaaatcaaaaacgagtagtgatctgggaaaataaagccttaaagtcctctgttggtgaacctgttc |
316 |
Q |
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| T |
22549764 |
taacaagcattttaagataatgacatcgacatttgaaatcaaaaacgagtagtgatctgggaaaataaagccttaaagtcctttgttggtgaacctgttc |
22549863 |
T |
|
| Q |
317 |
cctcgggttttgatgccaaatcaaatgccttaaattgagcctcctcaaaatttagtgcctgttaaacaaattgaatgagaggtcattcaaatcacataga |
416 |
Q |
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| T |
22549864 |
cctcgggttttgatgccaaatcaaatgccttaaattgagcctcctcaaaatttagtgcctgttaaacaaattgaatgagaggacattcaaatcacataga |
22549963 |
T |
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| Q |
417 |
tgagca |
422 |
Q |
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| T |
22549964 |
tgagca |
22549969 |
T |
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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 378
Target Start/End: Complemental strand, 7296104 - 7295981
Alignment:
| Q |
255 |
tcaaaaacgagtagtgatctgggaaaataaagccttaaagtcctctgttggtgaacctgttccctcgggttttgatgccaaatcaaatgccttaaattga |
354 |
Q |
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||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||| ||||| ||||| ||||||||||| | ||||||||||| |||| | |
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| T |
7296104 |
tcaaaaacgagaagtgagctgggaaaacaaagccttgaagtcctttgttggttcacctgcaccctcaggttttgatgctaggtcaaatgccttcaattta |
7296005 |
T |
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| Q |
355 |
gcctcctcaaaatttagtgcctgt |
378 |
Q |
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| T |
7296004 |
gtctcctcataatttagtacctgt |
7295981 |
T |
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