View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18734_high_4 (Length: 395)
Name: NF18734_high_4
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 25168107 - 25168491
Alignment:
| Q |
1 |
ctaggagagactggatgtttgatggtggaaacatgagtggagggaagacttctctgctaagtcttctgatacggctcttgtttaaatagtagttgaggag |
100 |
Q |
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| T |
25168107 |
ctaggagagactagatgtttgatggtggaaacatgagtggagggaagacttctctgctaagtcttctgatacggctcttgtttaaagagtagttgaggag |
25168206 |
T |
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| Q |
101 |
gaggtcatttctaccgagcttgttggggcattgtctttggtttagaaattttgggctccatcaaaggtggttgtgttttcgtggaatcttcttcatagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25168207 |
gaggtcatttctaccgagcttgttggggcattgtctttggtttagaaattttgggctccatcaaaggtggttgtgttttcgtggaatcttcttcatagag |
25168306 |
T |
|
| Q |
201 |
agtggtaaaaagaggaggttaggtttgagtcttatttgagatgttgttatgtggcttttgtggagttcccgcaatcatcttatctttgttcggggtcctg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25168307 |
agtggtaaaaagaggaggttaggtttgagtcttatttgagatgttgttatgtggcttttgtggagttcccgcaatgatcttatctttgttcggggtcctg |
25168406 |
T |
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| Q |
301 |
tttttgaaataaaatagagacaatataatatatatttttagaggagacaaaatataattgctgctaatgtttacccccctgtgat |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25168407 |
tttttgaaataaaatagagacaatataatatatatttttagaggagacaaaatataattgctgctaatgtttacccccctgtgat |
25168491 |
T |
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