View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18734_high_6 (Length: 360)
Name: NF18734_high_6
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 7554108 - 7554448
Alignment:
| Q |
1 |
aacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtnnnnnnngaaacatttgac |
100 |
Q |
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| T |
7554108 |
aacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtaaaaaaagaaaaatttgac |
7554207 |
T |
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| Q |
101 |
attttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactccaatcccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554208 |
attttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactccaatcccatg |
7554307 |
T |
|
| Q |
201 |
caggcggagcttctatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaattaatctcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554308 |
caggcggagcttctatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaattaatctcttt |
7554407 |
T |
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| Q |
301 |
gagtagcgtgcagttttctaccacatgcttcactccctttt |
341 |
Q |
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| T |
7554408 |
gagtagcgtgcagttttctaccacatgcttcactccctttt |
7554448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 9411195 - 9411313
Alignment:
| Q |
221 |
ctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttcta |
320 |
Q |
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| T |
9411195 |
ctcaatgacggccttgaaaataccatatcgtcaacaatattagcatgcactcgatgacaacgccgcaaattgatctctttgagttgcaggcaatttccta |
9411294 |
T |
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| Q |
321 |
ccacatgcttcactccctt |
339 |
Q |
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| T |
9411295 |
ccacatgcatcactccctt |
9411313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 7994375 - 7994324
Alignment:
| Q |
287 |
aaattaatctctttgagtagcgtgcagttttctaccacatgcttcactccct |
338 |
Q |
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|||| ||||||||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
7994375 |
aaataaatctctttcagttgcgtgcagttttctaccacatgtttcactccct |
7994324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 32267381 - 32267433
Alignment:
| Q |
287 |
aaattaatctctttgagtagcgtgcagttttctaccacatgcttcactccctt |
339 |
Q |
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| T |
32267381 |
aaattaatctttctaagttgcgtgcagttttctactacatgcttcactccctt |
32267433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 41901709 - 41901676
Alignment:
| Q |
306 |
gcgtgcagttttctaccacatgcttcactccctt |
339 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
41901709 |
gcgtacagttttctaccacatgcttcactccctt |
41901676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 51114041 - 51113922
Alignment:
| Q |
220 |
tctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttct |
319 |
Q |
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|||||||||||||||||||| || ||| | |||||| ||| ||| ||||||| |||| || |||||||||||| | ||| ||||| |||||| |
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| T |
51114041 |
tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttct |
51113942 |
T |
|
| Q |
320 |
accacatgcttcactccctt |
339 |
Q |
| |
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|||||||||||||||||||| |
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| T |
51113941 |
accacatgcttcactccctt |
51113922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 3438824 - 3438786
Alignment:
| Q |
219 |
ttctcaatgatggccttgaaactaccatctcgtcaacaa |
257 |
Q |
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| T |
3438824 |
ttctcaatgatggctttgaaaataccatctcgtcaacaa |
3438786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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