View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18734_high_9 (Length: 307)
Name: NF18734_high_9
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 30781817 - 30781549
Alignment:
| Q |
10 |
attattctttgattcttaacatattcatcccttctggtgatttgttannnnnnnagtcactaatcgcctaatttatgattattgcttatgattattccat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
30781817 |
attattctttgattcttaacatattcatcccttctggtgatttgttatttttttagtcactaatcgcctaatttatgattattcc--atgcttatt---- |
30781724 |
T |
|
| Q |
110 |
gcttactataatgaaaaatccaattcacaaactatgcatcgttaaaatttgcattttaataataggtcttcaggtttactgctaggaataaattggacca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30781723 |
----actataatgaaaaatccaattcacaaactatgcatcgttaaaatttgcattttaataataggtcttcaggtttactgctaggaataagttggacca |
30781628 |
T |
|
| Q |
210 |
aaacctatctcatcgaaggtagtgaagcatgagatgtagagaggaagagggtaactggaagacaaaaatgaagcaaagatt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30781627 |
aaacctatctcatcgaaggtagtgaagcatgagatgt--agaggaagagggtaactggaagacaaaaatgaagcaaagatt |
30781549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 30782019 - 30781879
Alignment:
| Q |
10 |
attattctttgattcttaacatattcatcccttctggtgatttgttannnnnnnagtcactaatcgcctaatttatgattattgcttatgattattccat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
30782019 |
attattctttgattcttaacatattcatcccttctggtgatttgttatttttttagtcactaatcgcctaatttatgattattcc--atgctta------ |
30781928 |
T |
|
| Q |
110 |
gcttactataatgaaaaatccaattcacaaactatgcatcgttaaaatttg |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30781927 |
--ttactataatgaaaaatccaattcacaaactatgcatcgttaaaatttg |
30781879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University