View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18734_low_1 (Length: 492)
Name: NF18734_low_1
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Original strand, 20140255 - 20140725
Alignment:
| Q |
7 |
caaattgttgaaatcacgcaaacttaaatataataataaaatgtgaaagaagcagagatacaaaatacaaaggccaataaatactactctcgtatgagat |
106 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20140255 |
caaattgttgaaatcacacaaacttaaatataataataaaatgtgaaagaagctgagatacaaaatacaaatgccaataaatactactctcgtatgagat |
20140354 |
T |
|
| Q |
107 |
atttcttcccatat-aaaagacagaacataaaaattacaaaataaagagaaagaatgattcaagcgtacataggcatatcagtccaagcaccagaaacat |
205 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140355 |
atttcttcccatattaaaagacagaacataaaaattacaaaataaagagaaagaatgattcaagcgtacataggcatatcagtccaagcaccagaaacat |
20140454 |
T |
|
| Q |
206 |
gaccattatcacaaacataagccctaacaacaggttcaccatcatcatgataaccaaatcctctcctcaaacaaaaagcagagtgaagatcccaagtatg |
305 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140455 |
gaccattatcacaaacataagctctaacaacaggttcaccatcatcatgataaccaaatcctctcctcaaacaaaaagcagagtgaagatcccaagtatg |
20140554 |
T |
|
| Q |
306 |
attacaagaacaaaaagcacaagccaaatcaatcttcttccgattactaatatcattcacagtcttccaaacacgtgttttcttgaaattcataaaaaca |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20140555 |
attacaagaacaaaaagcacaagccaaatcaatcttcttccgattactaatatcattcacagtcttccaaacacgtgttttcttgaaattcataaaaata |
20140654 |
T |
|
| Q |
406 |
cctcgaaaaagtctatactttctcttctcttccaaatgaacacaaccaggccaatcacaaacgtataaaca |
476 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140655 |
cctcgaaaaagtctatactttctcttctcttccaaatgaacacaaccaggccaatcacaaacgtataaaca |
20140725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Original strand, 44317670 - 44318140
Alignment:
| Q |
7 |
caaattgttgaaatcacgcaaacttaaatataataataaaatgtgaaagaagcagagatacaaaatacaaaggccaataaatactactctcgtatgagat |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44317670 |
caaattgttgaaatcacacaaacttaaatataataataaaatgtgaaagaagctgagatacaaaatacaaatgccaataaatactactctcgtatgagat |
44317769 |
T |
|
| Q |
107 |
atttcttcccatat-aaaagacagaacataaaaattacaaaataaagagaaagaatgattcaagcgtacataggcatatcagtccaagcaccagaaacat |
205 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44317770 |
atttcttcccatattaaaagacagaacataaaaattacaaaataaagagaaagaatgattcaagcgtacataggcatatcagtccaagcaccagaaacat |
44317869 |
T |
|
| Q |
206 |
gaccattatcacaaacataagccctaacaacaggttcaccatcatcatgataaccaaatcctctcctcaaacaaaaagcagagtgaagatcccaagtatg |
305 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44317870 |
gaccattatcacaaacataagctctaacaacaggttcaccatcatcatgataaccaaatcctctcctcaaacaaaaagcagagtgaagatcccaagtatg |
44317969 |
T |
|
| Q |
306 |
attacaagaacaaaaagcacaagccaaatcaatcttcttccgattactaatatcattcacagtcttccaaacacgtgttttcttgaaattcataaaaaca |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44317970 |
attacaagaacaaaaagcacaagccaaatcaatcttcttccgattactaatatcattcacagtcttccaaacacgtgttttcttgaaattcataaaaata |
44318069 |
T |
|
| Q |
406 |
cctcgaaaaagtctatactttctcttctcttccaaatgaacacaaccaggccaatcacaaacgtataaaca |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44318070 |
cctcgaaaaagtctatactttctcttctcttccaaatgaacacaaccaggccaatcacaaacgtataaaca |
44318140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 29632234 - 29632351
Alignment:
| Q |
136 |
aaaattacaaaataaagagaaagaatgattcaagcgtacataggcatatcagtccaagcaccagaaacatgaccattatcacaaacataagccctaacaa |
235 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
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|
| T |
29632234 |
aaaaatacaaaataaagagaaagaatgat-caaatgtacataggtaaatcagtccaagcaccagaaacatgaccattgtcacaaacataagtacaaacaa |
29632332 |
T |
|
| Q |
236 |
caggttcaccatcatcatg |
254 |
Q |
| |
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||||||||| ||||||||| |
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| T |
29632333 |
caggttcacgatcatcatg |
29632351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 29632116 - 29632181
Alignment:
| Q |
66 |
acaaaatacaaaggccaataaatactactctcgtatgagatatttcttcccatataaaagacagaa |
131 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| |||||||| ||||||||||||| ||||| |||| |
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|
| T |
29632116 |
acaaaatacaaatgcaaataagtactactctcatatgagatctttcttcccatattaaagaaagaa |
29632181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 16320332 - 16320450
Alignment:
| Q |
135 |
aaaaattacaaaataaagagaaagaatgattcaagcgtacataggcatatcagtccaagcaccagaaacatgaccattatcacaaacataagccctaaca |
234 |
Q |
| |
|
||||| |||| ||||||||||| |||| || ||| |||||||||| |||||||||| |||||||||| || |||||||| |||||||||| | |||| |
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| T |
16320332 |
aaaaaatacagaataaagagaatgaataatg-aagtgtacataggctcatcagtccaatcaccagaaactcgatcattatcagaaacataagcacaaaca |
16320430 |
T |
|
| Q |
235 |
acaggttcaccatcatcatg |
254 |
Q |
| |
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||||||||||||||||||| |
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| T |
16320431 |
tcaggttcaccatcatcatg |
16320450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 16321519 - 16321573
Alignment:
| Q |
66 |
acaaaatacaaaggccaataaatactactctcgtatgagatatttcttcccatat |
120 |
Q |
| |
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|||||||||||| || |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
16321519 |
acaaaatacaaatgcaaataaatactactctcatatgagatatttcttcccatat |
16321573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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