View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18734_low_11 (Length: 302)

Name: NF18734_low_11
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18734_low_11
NF18734_low_11
[»] chr5 (28 HSPs)
chr5 (144-286)||(18004714-18004856)
chr5 (15-143)||(18004280-18004409)
chr5 (148-288)||(9537102-9537242)
chr5 (142-286)||(9537954-9538098)
chr5 (172-281)||(32555456-32555565)
chr5 (142-211)||(14891127-14891196)
chr5 (151-211)||(2464752-2464812)
chr5 (149-211)||(4592942-4593004)
chr5 (155-205)||(16611815-16611865)
chr5 (141-211)||(25590503-25590573)
chr5 (149-211)||(32641706-32641768)
chr5 (149-210)||(546017-546078)
chr5 (151-216)||(16979075-16979140)
chr5 (155-276)||(35538216-35538337)
chr5 (236-284)||(544796-544844)
chr5 (236-286)||(545961-546011)
chr5 (236-286)||(2464817-2464867)
chr5 (236-286)||(2466698-2466748)
chr5 (236-282)||(4594030-4594076)
chr5 (153-211)||(8075813-8075871)
chr5 (236-286)||(25590578-25590628)
chr5 (179-233)||(27720874-27720928)
chr5 (149-211)||(28589780-28589842)
chr5 (236-286)||(28591038-28591088)
chr5 (187-276)||(18400297-18400386)
chr5 (142-211)||(31947017-31947086)
chr5 (236-281)||(40611408-40611453)
chr5 (164-216)||(32640384-32640436)
[»] chr1 (31 HSPs)
chr1 (142-276)||(22856754-22856886)
chr1 (145-287)||(22857483-22857625)
chr1 (149-276)||(51450082-51450208)
chr1 (142-274)||(34088386-34088518)
chr1 (149-285)||(3117730-3117866)
chr1 (163-252)||(33342511-33342600)
chr1 (155-286)||(8975246-8975377)
chr1 (155-286)||(44720752-44720885)
chr1 (141-217)||(6613952-6614029)
chr1 (142-276)||(6612493-6612618)
chr1 (156-288)||(11060688-11060819)
chr1 (155-271)||(50107123-50107239)
chr1 (149-207)||(7944236-7944294)
chr1 (141-211)||(7945534-7945604)
chr1 (141-211)||(10333166-10333236)
chr1 (149-276)||(25037959-25038089)
chr1 (149-276)||(25043171-25043301)
chr1 (150-211)||(9339728-9339789)
chr1 (165-285)||(39726592-39726712)
chr1 (142-205)||(5783095-5783158)
chr1 (151-210)||(10333069-10333128)
chr1 (241-288)||(11830062-11830109)
chr1 (236-286)||(9340950-9341000)
chr1 (141-211)||(9341005-9341075)
chr1 (141-211)||(32665750-32665820)
chr1 (236-286)||(52440485-52440535)
chr1 (141-211)||(52440540-52440609)
chr1 (243-288)||(1001326-1001371)
chr1 (143-288)||(1001805-1001950)
chr1 (155-211)||(1407727-1407783)
chr1 (236-276)||(7944303-7944343)
[»] chr2 (43 HSPs)
chr2 (142-288)||(17466731-17466877)
chr2 (141-288)||(34037576-34037723)
chr2 (149-275)||(31814260-31814386)
chr2 (155-286)||(7412179-7412310)
chr2 (155-280)||(38853842-38853967)
chr2 (149-276)||(17466122-17466249)
chr2 (164-274)||(26585174-26585282)
chr2 (158-276)||(33161857-33161976)
chr2 (155-286)||(37607189-37607320)
chr2 (149-211)||(31091507-31091569)
chr2 (163-288)||(12746104-12746229)
chr2 (184-281)||(14887408-14887505)
chr2 (149-281)||(38984898-38985031)
chr2 (197-286)||(43380696-43380785)
chr2 (141-209)||(31090237-31090305)
chr2 (151-210)||(39016364-39016423)
chr2 (149-275)||(33163374-33163500)
chr2 (141-286)||(21733676-21733821)
chr2 (241-286)||(31443150-31443195)
chr2 (149-286)||(36012728-36012865)
chr2 (201-286)||(43381096-43381181)
chr2 (236-284)||(32766165-32766213)
chr2 (141-216)||(7073712-7073787)
chr2 (144-211)||(39015081-39015148)
chr2 (236-286)||(14704153-14704203)
chr2 (236-286)||(31091452-31091502)
chr2 (155-281)||(38854876-38855002)
chr2 (141-286)||(17330144-17330280)
chr2 (155-276)||(34582585-34582706)
chr2 (151-211)||(14704089-14704148)
chr2 (12-55)||(5095974-5096017)
chr2 (141-211)||(2910173-2910243)
chr2 (236-286)||(24458208-24458258)
chr2 (155-201)||(26586285-26586331)
chr2 (149-211)||(32765019-32765080)
chr2 (236-286)||(39015153-39015203)
chr2 (172-286)||(39256926-39257040)
chr2 (241-286)||(12003740-12003785)
chr2 (149-190)||(24458141-24458182)
chr2 (236-288)||(24459377-24459429)
chr2 (236-276)||(32765085-32765125)
chr2 (155-275)||(38856283-38856403)
chr2 (164-216)||(39999048-39999100)
[»] chr8 (26 HSPs)
chr8 (142-286)||(5965347-5965491)
chr8 (149-286)||(30134647-30134784)
chr8 (151-274)||(5736925-5737048)
chr8 (149-275)||(28619070-28619196)
chr8 (155-286)||(28524845-28524976)
chr8 (141-211)||(1952950-1953020)
chr8 (149-286)||(5737928-5738065)
chr8 (155-288)||(39138567-39138700)
chr8 (141-286)||(45476235-45476380)
chr8 (194-285)||(32564415-32564506)
chr8 (165-226)||(41122716-41122777)
chr8 (163-274)||(9626378-9626488)
chr8 (163-274)||(31075208-31075318)
chr8 (149-211)||(32898425-32898487)
chr8 (155-276)||(31074081-31074202)
chr8 (197-286)||(33314987-33315076)
chr8 (236-286)||(10406354-10406404)
chr8 (220-286)||(24199082-24199148)
chr8 (149-211)||(35177476-35177538)
chr8 (149-211)||(45476543-45476605)
chr8 (241-286)||(2552187-2552231)
chr8 (241-286)||(2561339-2561384)
chr8 (18-55)||(20065623-20065660)
chr8 (229-286)||(28526449-28526506)
chr8 (155-199)||(8569495-8569539)
chr8 (241-281)||(36032879-36032919)
[»] chr4 (22 HSPs)
chr4 (150-281)||(39869002-39869133)
chr4 (150-276)||(19050320-19050444)
chr4 (150-286)||(4701847-4701981)
chr4 (155-286)||(21623022-21623153)
chr4 (157-286)||(20599811-20599940)
chr4 (155-288)||(32244361-32244494)
chr4 (155-288)||(21621910-21622043)
chr4 (158-251)||(56041054-56041147)
chr4 (149-275)||(39870590-39870716)
chr4 (163-276)||(32244603-32244716)
chr4 (149-271)||(44158585-44158707)
chr4 (141-277)||(26172854-26172992)
chr4 (142-205)||(53770407-53770470)
chr4 (142-286)||(4703122-4703266)
chr4 (149-205)||(26685408-26685464)
chr4 (149-205)||(53771035-53771091)
chr4 (241-284)||(25810340-25810383)
chr4 (149-211)||(42278130-42278192)
chr4 (151-205)||(48740006-48740060)
chr4 (153-211)||(50694834-50694892)
chr4 (245-281)||(26685374-26685410)
chr4 (245-281)||(48739970-48740006)
[»] scaffold0767 (2 HSPs)
scaffold0767 (149-288)||(5680-5817)
scaffold0767 (188-252)||(6189-6253)
[»] chr7 (43 HSPs)
chr7 (165-285)||(6680439-6680559)
chr7 (149-288)||(12223602-12223741)
chr7 (151-274)||(34888840-34888963)
chr7 (164-286)||(32793267-32793389)
chr7 (164-281)||(48249654-48249771)
chr7 (150-286)||(8048689-8048825)
chr7 (150-286)||(19433840-19433975)
chr7 (149-288)||(8046897-8047035)
chr7 (149-217)||(13578295-13578362)
chr7 (142-233)||(12220097-12220187)
chr7 (155-281)||(27067869-27067995)
chr7 (155-281)||(27210318-27210444)
chr7 (141-211)||(10899053-10899123)
chr7 (149-211)||(42477461-42477523)
chr7 (141-211)||(48788652-48788722)
chr7 (164-273)||(8879461-8879570)
chr7 (155-276)||(24287567-24287688)
chr7 (157-217)||(33060899-33060959)
chr7 (164-276)||(34707697-34707808)
chr7 (235-286)||(43457615-43457666)
chr7 (148-211)||(45584476-45584539)
chr7 (150-269)||(5930051-5930174)
chr7 (141-211)||(7258348-7258418)
chr7 (142-249)||(33607557-33607672)
chr7 (194-276)||(34710318-34710400)
chr7 (155-288)||(24288769-24288902)
chr7 (141-210)||(48647424-48647493)
chr7 (245-281)||(8375533-8375569)
chr7 (236-286)||(7258423-7258473)
chr7 (149-211)||(7259664-7259726)
chr7 (141-211)||(30924989-30925058)
chr7 (141-211)||(35727772-35727841)
chr7 (164-218)||(44529124-44529178)
chr7 (149-211)||(48646130-48646192)
chr7 (141-210)||(46286576-46286645)
chr7 (149-205)||(8375569-8375625)
chr7 (241-281)||(9365202-9365242)
chr7 (236-288)||(30924932-30924984)
chr7 (236-288)||(35727846-35727898)
chr7 (245-281)||(39824306-39824342)
chr7 (236-276)||(42477528-42477568)
chr7 (149-189)||(43461730-43461770)
chr7 (236-288)||(48777405-48777457)
[»] chr6 (6 HSPs)
chr6 (157-276)||(10855895-10856009)
chr6 (142-281)||(31239897-31240036)
chr6 (149-274)||(24940479-24940602)
chr6 (246-286)||(19600149-19600189)
chr6 (142-190)||(30748073-30748121)
chr6 (157-205)||(31219146-31219194)
[»] chr3 (25 HSPs)
chr3 (164-276)||(612310-612422)
chr3 (141-276)||(3671111-3671246)
chr3 (149-286)||(20464150-20464287)
chr3 (157-276)||(36827390-36827509)
chr3 (141-216)||(36279025-36279100)
chr3 (142-205)||(47118037-47118100)
chr3 (141-211)||(36280297-36280367)
chr3 (148-211)||(53959080-53959143)
chr3 (149-205)||(33427832-33427888)
chr3 (149-205)||(47075337-47075393)
chr3 (236-286)||(48808520-48808570)
chr3 (149-205)||(47428549-47428605)
chr3 (236-288)||(48573133-48573185)
chr3 (236-286)||(17700667-17700717)
chr3 (141-211)||(52317052-52317122)
chr3 (149-211)||(55388154-55388216)
chr3 (199-288)||(3694043-3694132)
chr3 (149-190)||(17700599-17700640)
chr3 (149-190)||(17701920-17701961)
chr3 (241-286)||(36279105-36279150)
chr3 (236-281)||(48574389-48574434)
chr3 (149-190)||(48574460-48574501)
chr3 (241-286)||(55389394-55389439)
chr3 (149-205)||(45600925-45600981)
chr3 (236-288)||(48809578-48809630)
[»] scaffold0039 (2 HSPs)
scaffold0039 (149-276)||(79154-79281)
scaffold0039 (142-216)||(79658-79732)
[»] scaffold0009 (1 HSPs)
scaffold0009 (155-285)||(142329-142458)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 18004714 - 18004856
Alignment:
Q  144 gtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtga 243  Q
    |||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  18004714 gtctatgactctgcacttccgttatcactttagtctctgatgttaaatagttatgttaagtgataatgcgatataagttgtacgatgacaaggcatgtga 18004813  T
Q  244 ggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||||||||||||||||| ||||||||||||||||||| ||||    
T  18004814 ggtgtcacagagactaaaatgaaagtagaaaatagtcactttg 18004856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 18004280 - 18004409
Alignment:
Q  15 gagttgtccaaaaattatctcaaaattattgtataaatatcgtatctttaaataatgtgataaaaagataaa-caagtagaaaatggggtgtaaacggtg 113  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||  ||  | |||| |||||||||||||||    
T  18004280 gagttgtccaaaaattatctcaaaattattgtataaatatcatttctctaaattatgtgataaaaagataaaggaaaaaaaaaaaggggtgtaaacggtg 18004379  T
Q  114 acgtaggaaaagttttaggaaaaatagtaa 143  Q
    ||||||||||||||||||| ||||||||||    
T  18004380 acgtaggaaaagttttagggaaaatagtaa 18004409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 288
Target Start/End: Original strand, 9537102 - 9537242
Alignment:
Q  148 atgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtg 247  Q
    |||||| ||||||| | |||||| ||||||| ||||||||||||| ||||| |||||||||||| | || | ||||||||| |||||| ||| ||| |||    
T  9537102 atgactgtgcacttccattatcactttagtcactgacgttaaataattatggtaagtgatgatgtggcacatgttttacgacgacaagtcatatgatgtg 9537201  T
Q  248 tcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  9537202 tcacagtgactaaagtgaaagtagaaaatagtcactttgat 9537242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 286
Target Start/End: Complemental strand, 9538098 - 9537954
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgt 241  Q
    |||||| ||| | ||||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||| |||| | |||||||||||| | | ||| |    
T  9538098 aagtctctgattgtgcacttccgttatcattttagtctctgatgttaaataattatgttaagtgattatgtgacacatgttttacgatgatatgacatat 9537999  T
Q  242 gaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    || || |||||  |||||||||||||||| ||||| |||| ||||    
T  9537998 gatgtttcacatggactaaagtgaaagtataaaatggtcactttg 9537954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 32555565 - 32555456
Alignment:
Q  172 tttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtag 271  Q
    ||||||| | ||||||||||| ||||||||| |||||||  |||| | |||||| | ||||||||  | ||||||||||||  |||||||||||||||||    
T  32555565 tttagtccccgacgttaaataattatgttaattgatgatatgacaaaggttttatgctgacaaggagtatgaggtgtcacatggactaaagtgaaagtag 32555466  T
Q  272 aaaatagtca 281  Q
    ||||| ||||    
T  32555465 aaaattgtca 32555456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 14891196 - 14891127
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    |||||| ||||||| ||||| |||||||| ||||||||||||||||||| |  |||||||||||||||||    
T  14891196 aagtctctgactctacacttccgttatcactttagtctctgacgttaaaaaaatatgttaagtgatgatg 14891127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 2464752 - 2464812
Alignment:
Q  151 actctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||| |||||||| ||||||||||||||||||| |  | |||||||||||||||    
T  2464752 actctgcacttacgttatcactttagtctctgacgttaaaaaaatttgttaagtgatgatg 2464812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 4592942 - 4593004
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||| |||||||| ||||||| ||||||||||| |  | |||||||||||||||    
T  4592942 tgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatg 4593004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 16611815 - 16611865
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    ||||||| |||||||| ||||||||||||||||||||| || |||||||||    
T  16611815 tgcacttccgttatcactttagtctctgacgttaaataattctgttaagtg 16611865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 25590503 - 25590573
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||| |||||||||  ||||||| |||| |||||||||||||| | || |||||||||||||||    
T  25590503 taagtctctgattctgcacttctgttatcactttaatctctgacgttaaaaaattttgttaagtgatgatg 25590573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 32641768 - 32641706
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||| |||||||| |||| || ||||||||||| |  |||||||||||||||||    
T  32641768 tgactctgcacttccgttatcactttaatccctgacgttaaaaaaatatgttaagtgatgatg 32641706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 546078 - 546017
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgat 210  Q
    ||||||||||||| |||||||| ||||||| ||||||||||| |  | ||||||||||||||    
T  546078 tgactctgcacttccgttatcactttagtccctgacgttaaaaaaatttgttaagtgatgat 546017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 16979075 - 16979140
Alignment:
Q  151 actctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgaca 216  Q
    |||||| |||| ||||||||||||||||||| ||||||| |  || ||||||||||||||| ||||    
T  16979075 actctgtacttacgttatcattttagtctctaacgttaagttattctgttaagtgatgatgtgaca 16979140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 35538337 - 35538216
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||||||| |||| ||  | | |||||||| || |||||| ||||||||||||| |  ||||| | | | || |  | |||||||||||| |    
T  35538337 tgcacttccgttatcactttaatccttaatgttaaataattctgttaactgatgatgcgacaaacattttatgctaagaaagagtatgaggtgtcacaaa 35538238  T
Q  255 gactaaagtgaaagtagaaaat 276  Q
    ||||||||||||||||||||||    
T  35538237 gactaaagtgaaagtagaaaat 35538216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 544796 - 544844
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattt 284  Q
    |||| ||||||||||||| ||  ||||||||||||||||||||||||||    
T  544796 gcatatgaggtgtcacagggatcaaagtgaaagtagaaaatagtcattt 544844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 546011 - 545961
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||  ||| ||||||||||||||||||||||| ||||    
T  546011 gcatatgaggtgtcacaaggaccaaagtgaaagtagaaaatagtcactttg 545961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 2464817 - 2464867
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  2464817 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttg 2464867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 2466748 - 2466698
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||| ||  ||| ||||||||||||||||||||||||||||    
T  2466748 gcatatgaggtgtcccatggaccaaagtgaaagtagaaaatagtcattttg 2466698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 4594076 - 4594030
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcat 282  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||||    
T  4594076 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcat 4594030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 8075871 - 8075813
Alignment:
Q  153 tctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    |||||||||||||||||| ||||||| |||||||| || |  | |||||||||||||||    
T  8075871 tctgcactttcgttatcactttagtccctgacgtttaaaaaatctgttaagtgatgatg 8075813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 25590578 - 25590628
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  25590578 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttg 25590628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 27720928 - 27720874
Alignment:
Q  179 tctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgaca 233  Q
    |||||||||||||| || ||||||||||||||| |||| | ||||||| ||||||    
T  27720928 tctgacgttaaataattctgttaagtgatgatgtgacacatgttttacaatgaca 27720874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 28589780 - 28589842
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||| || |||| ||||| |||||||||||||||||||||| |  | |||||||||||||||    
T  28589780 tgactttgtacttccgttaccattttagtctctgacgttaaaaaaatctgttaagtgatgatg 28589842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 28591088 - 28591038
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  28591088 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttg 28591038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 18400297 - 18400386
Alignment:
Q  187 taaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaat 276  Q
    |||||| |||||||||||||||||| | |  | ||||||| |||||| | ||| | ||||||||||  || ||||| |||||||||||||    
T  18400297 taaataattatgttaagtgatgatgtggctcaggttttacaatgacatgacatatcaggtgtcacatggagtaaagcgaaagtagaaaat 18400386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 31947086 - 31947017
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||||  |||| |||||||| ||||||| |||  |||||| |  |||||||||||||||||    
T  31947086 aagtctatgactctagacttccgttatcactttagtcactgctgttaaaaaaatatgttaagtgatgatg 31947017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 40611408 - 40611453
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
    |||| ||||||||||||| ||| |||||||||||||||||| ||||    
T  40611408 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtca 40611453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 32640384 - 32640436
Alignment:
Q  164 gttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgaca 216  Q
    ||||||| ||||||||||||||||||| |  | ||||||||||||||| ||||    
T  32640384 gttatcactttagtctctgacgttaaaaaaatttgttaagtgatgatgtgaca 32640436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 22856754 - 22856886
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgt 241  Q
    |||||| | ||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||| ||| |||| || ||||||||||||| ||||| |    
T  22856754 aagtctctaactctgcacttccgttatcactttagtctccgacgttaaataattatgttaagtgattatgtgacacaaattttacgatgacatggcatat 22856853  T
Q  242 gaggtgtcacagagactaaagtgaaagtagaaaat 276  Q
    ||||||||||  |||||||||||||||||||||||    
T  22856854 gaggtgtcac--agactaaagtgaaagtagaaaat 22856886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 145 - 287
Target Start/End: Complemental strand, 22857625 - 22857483
Alignment:
Q  145 tctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgag 244  Q
    ||||||||| ||||||| |||||||| |||||||  |||||||||||| |||||||||||||||||| |||| ||||||||  |||||| | ||| ||||    
T  22857625 tctatgactttgcacttccgttatcactttagtccatgacgttaaataattatgttaagtgatgatgtgacacaagttttataatgacatgacatatgag 22857526  T
Q  245 gtgtcacagagactaaagtgaaagtagaaaatagtcattttga 287  Q
    ||||||||  |||||||||||||||||||| |||||| |||||    
T  22857525 gtgtcacatggactaaagtgaaagtagaaactagtcactttga 22857483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 51450082 - 51450208
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||| ||||| |||| | |||||||||||||| | ||| ||||||||    
T  51450082 tgactctgcactttcgt-atcattttagtatctgacgttaaataattttgttaagtggtgatgtgacacatgttttacgatgacatgtcatatgaggtgt 51450180  T
Q  249 cacagagactaaagtgaaagtagaaaat 276  Q
    ||||| ||||||| ||||||||||||||    
T  51450181 cacagggactaaactgaaagtagaaaat 51450208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 34088518 - 34088386
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgt 241  Q
    |||||| ||||||||||||| |  ||||| |||| ||  |||| ||||||| ||||||||||||||||||||||| | |||||||||||||| | ||| |    
T  34088518 aagtctctgactctgcacttccactatcactttaatccttgacattaaataattatgttaagtgatgatgcgacacatgttttacgatgacatgacattt 34088419  T
Q  242 gaggtgtcacagagactaaagtgaaagtagaaa 274  Q
    || |||||| || ||||||||||||||||||||    
T  34088418 gatgtgtcatagggactaaagtgaaagtagaaa 34088386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 285
Target Start/End: Original strand, 3117730 - 3117866
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||||| ||||| |||||||| |||||  ||||| |||||||| || |||||| |||||||| |||| | ||||||||||| || | ||| ||||||||    
T  3117730 tgactctccacttccgttatcactttagcgtctgaagttaaataattttgttaattgatgatgtgacacatgttttacgatggcatgacatatgaggtgt 3117829  T
Q  249 cacagagactaaagtgaaagtagaaaatagtcatttt 285  Q
    ||||  ||||||||||||||||||||||  |||||||    
T  3117830 cacaatgactaaagtgaaagtagaaaatgatcatttt 3117866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 33342511 - 33342600
Alignment:
Q  163 cgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcaca 252  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |||||||| | ||||||||  | ||||||||||||    
T  33342511 cgttatcactttagtctctgacgttaaataattatgttaagtgatgatgtgacaaaagttttatgctgacaaggagtatgaggtgtcaca 33342600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 286
Target Start/End: Original strand, 8975246 - 8975377
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    |||||||||||||||| |||||||| || ||||||||| || |||||| |||||||  |||| | |||||| |  |||||||  | |||| ||||||||     
T  8975246 tgcactttcgttatcactttagtctttggcgttaaataattttgttaattgatgatatgacaaatgttttatgccgacaaggagtatgagatgtcacagg 8975345  T
Q  255 gactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||||||||||||||||||||| |||| ||||    
T  8975346 gactaaagtgaaagtagaaaatggtcactttg 8975377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 286
Target Start/End: Complemental strand, 44720885 - 44720752
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaa--ggcatgtgaggtgtcaca 252  Q
    ||||||| | |||||| ||||||||||||||||||||| || | ||||  ||||| | |||| |||| ||| | ||||||  || || ||||||||||||    
T  44720885 tgcacttccattatcactttagtctctgacgttaaataattttattaaaagatgacgtgacaaaagtcttatgctgacaaagggtatatgaggtgtcaca 44720786  T
Q  253 gagactaaagtgaaagtagaaaatagtcattttg 286  Q
      |||||||||||||||||||||| |||| ||||    
T  44720785 ctgactaaagtgaaagtagaaaattgtcactttg 44720752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 6614029 - 6613952
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagt-ctctgacgttaaatagttatgttaagtgatgatgcgacat 217  Q
    ||||||| |||||||||||||  |||||||||||||| ||| ||||||||||| || ||||||||||||||| |||||    
T  6614029 taagtctctgactctgcacttcagttatcattttagtcctccgacgttaaataattttgttaagtgatgatgtgacat 6613952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 6612493 - 6612618
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgt 241  Q
    |||||| ||||||||||||| | |||||| |||| || ||||||||||||| || ||||||||||| ||| |||||         | |||||||| || |    
T  6612493 aagtctctgactctgcacttccattatcactttaatccctgacgttaaataattttgttaagtgattatgtgacat---------gctgacaaggaatat 6612583  T
Q  242 gaggtgtcacagagactaaagtgaaagtagaaaat 276  Q
    |||||||||||| ||||||| | ||||||||||||    
T  6612584 gaggtgtcacagggactaaattcaaagtagaaaat 6612618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 11060819 - 11060688
Alignment:
Q  156 gcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagag 255  Q
    ||||||||||||||| ||||||| | ||||||||||| || |||||| |||||| | |  | | ||||||   ||||||||  | |||||| |||||  |    
T  11060819 gcactttcgttatcactttagtccccgacgttaaataattctgttaactgatgacgtggaaaaggttttattctgacaaggggtatgaggt-tcacaatg 11060721  T
Q  256 actaaagtgaaagtagaaaatagtcattttgat 288  Q
    ||||||||||||||||||||| |||| ||||||    
T  11060720 actaaagtgaaagtagaaaattgtcactttgat 11060688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 50107239 - 50107123
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||||||| |||||||  || ||||||||| ||||||||| ||||||   |||| | |||||| | ||||||||  | ||||||||||||      
T  50107239 tgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatgacatgacaaaggttttatgctgacaaggagtatgaggtgtcacatg 50107140  T
Q  255 gactaaagtgaaagtag 271  Q
    |||||| ||||||||||    
T  50107139 gactaacgtgaaagtag 50107123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 7944236 - 7944294
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgat 207  Q
    |||||||||||||||||||||| ||||||| || |||||||| |  |||||||||||||    
T  7944236 tgactctgcactttcgttatcaatttagtccctaacgttaaaaaaatatgttaagtgat 7944294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 7945604 - 7945534
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||| ||||||| |||||||| ||||||| ||||||||||| |  |||| ||||||||||||    
T  7945604 taagtctctgactatgcacttccgttatcactttagtccctgacgttaaaaaaatatgctaagtgatgatg 7945534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 10333236 - 10333166
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||||||||||| |||||||| ||||||||||  ||||||| |  | |||||||||||||||    
T  10333236 taagtctctgactctgcacttccgttatcactttagtctctagcgttaaaaaaatctgttaagtgatgatg 10333166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 25037959 - 25038089
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgc----gacataagttttacgatgacaaggcatgtgag 244  Q
    |||||||| |||| |||||||| |||||| || ||| || | || |||||||||||||||||||    |||| | |||||| |||||||   ||| ||||    
T  25037959 tgactctggacttacgttatcactttagtttccgacattga-taattatgttaagtgatgatgcatgtgacacatgttttatgatgacataacatatgag 25038057  T
Q  245 gtgtcacagagactaaagtgaaagtagaaaat 276  Q
    ||||||||   |||||||||||||||||||||    
T  25038058 gtgtcacatgaactaaagtgaaagtagaaaat 25038089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 25043171 - 25043301
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgc----gacataagttttacgatgacaaggcatgtgag 244  Q
    |||||||| |||| |||||||| |||||| || ||| || | || |||||||||||||||||||    |||| | |||||| |||||||   ||| ||||    
T  25043171 tgactctggacttacgttatcactttagtttccgacattga-taattatgttaagtgatgatgcatgtgacacatgttttatgatgacataacatatgag 25043269  T
Q  245 gtgtcacagagactaaagtgaaagtagaaaat 276  Q
    ||||||||   |||||||||||||||||||||    
T  25043270 gtgtcacatgaactaaagtgaaagtagaaaat 25043301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 9339728 - 9339789
Alignment:
Q  150 gactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    |||||||||||| |||||||| ||||||| ||||||||||| |  | |||||||||||||||    
T  9339728 gactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatg 9339789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 39726712 - 39726592
Alignment:
Q  165 ttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtg 264  Q
    |||||| |||||||| ||||||| || | || |||||| |||||| | ||||   |||||  | ||||||||  |  ||||| ||| | |||||||||||    
T  39726712 ttatcagtttagtctttgacgttgaaaatttttgttaattgatgaggtgacaagtgttttgagctgacaaggtgtacgaggtatcatatagactaaagtg 39726613  T
Q  265 aaagtagaaaatagtcatttt 285  Q
    |||||||||||||||||||||    
T  39726612 aaagtagaaaatagtcatttt 39726592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 5783158 - 5783095
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    ||||| |||||||||||||| |||||||| ||||||| ||  ||||||||| || |||||||||    
T  5783158 aagtccatgactctgcacttccgttatcactttagtcactagcgttaaataattctgttaagtg 5783095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 10333069 - 10333128
Alignment:
Q  151 actctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgat 210  Q
    ||||||||||| ||||||||||||||||  |||||||||| |  | ||||||||||||||    
T  10333069 actctgcacttccgttatcattttagtccttgacgttaaaaaaatctgttaagtgatgat 10333128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 11830062 - 11830109
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    ||||||||||||  || ||||||||||||||||||| |||||||||||    
T  11830062 tgaggtgtcacatggattaaagtgaaagtagaaaatggtcattttgat 11830109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 9341000 - 9340950
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  9341000 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttg 9340950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 9341075 - 9341005
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||| |||||||  ||||||| ||||||||||||||||||| |  | | |||||||||||||    
T  9341075 taagtctctgactttgcacttctgttatcactttagtctctgacgttaaaaaaatctattaagtgatgatg 9341005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 32665820 - 32665750
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||||||||||| |||||||| ||||||| ||| ||||| | |  | |||||||||||||||    
T  32665820 taagtctttgactctgcacttccgttatcactttagtccctggcgttacaaaaatctgttaagtgatgatg 32665750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 52440535 - 52440485
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| | | ||||||||||||||||||||||| ||||    
T  52440535 gcatctgaggtgtcacaggggccaaagtgaaagtagaaaatagtcactttg 52440485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 52440609 - 52440540
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||||||||||| | |||||| |||||||| |||||||||| |  | |||||||||||||||    
T  52440609 taagtctctgactctgcacttccattatcactttagtct-tgacgttaaaaaaatgtgttaagtgatgatg 52440540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 1001326 - 1001371
Alignment:
Q  243 aggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    ||||||||||  ||||||||||||||||||||||||| | ||||||    
T  1001326 aggtgtcacatggactaaagtgaaagtagaaaatagttactttgat 1001371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 288
Target Start/End: Complemental strand, 1001950 - 1001805
Alignment:
Q  143 agtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtg 242  Q
    ||||||||| | || |||| |||||||| |||||||||| |||||||| | || |||||| |||||| | |  | | |||||  |||  ||| |   |||    
T  1001950 agtctatgaatgtgtacttccgttatcagtttagtctctaacgttaaaaaattttgttaactgatgaggtggaaaatgttttgtgatatcaatgtgcgtg 1001851  T
Q  243 aggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    ||||||||||  ||||||| |||||||| |||| ||||||||||||    
T  1001850 aggtgtcacatggactaaaatgaaagtaaaaaaaagtcattttgat 1001805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 1407727 - 1407783
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    |||||||  ||||||| ||||||| ||||||||||||| || |||||| ||||||||    
T  1407727 tgcacttatgttatcactttagtccctgacgttaaataattttgttaactgatgatg 1407783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 7944303 - 7944343
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaat 276  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  7944303 gcatatgaggtgtcacatagaccaaagtgaaagtagaaaat 7944343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 288
Target Start/End: Complemental strand, 17466877 - 17466731
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgt 241  Q
    |||||| ||||||||||||| |||||||| ||||||||  ||||||||||| || ||||||||||||||| |||| | |||||| ||||||||||||| |    
T  17466877 aagtctctgactctgcacttccgttatcactttagtctaagacgttaaataattctgttaagtgatgatgtgacacatgttttaggatgacaaggcatat 17466778  T
Q  242 gaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||||||||||   ||||||||||||||| ||||| |||| ||||||    
T  17466777 gaggtgtcacacgcactaaagtgaaagtaaaaaatggtcaatttgat 17466731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 288
Target Start/End: Complemental strand, 34037723 - 34037576
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatg 240  Q
    |||||||||||||||||||||  ||||||| ||||||  | | ||||||| | |||||||||||||||||| |||| | |||||| | ||||||||  |     
T  34037723 taagtctatgactctgcacttctgttatcactttagttcccgccgttaaaaaattatgttaagtgatgatgtgacacatgttttatgctgacaaggagta 34037624  T
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  34037623 tgaggtgtcacacagactaaagtgacagtagaaaatagtcactttgat 34037576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 31814386 - 31814260
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||||||||||| |||||||| ||||||| ||  | ||||||| || ||||||||||||||| |||| |||||||||||||||| |  || ||||||||    
T  31814386 tgactctgcacttccgttatcactttagtccctagcattaaataattctgttaagtgatgatgtgacacaagttttacgatgacatgaaatatgaggtgt 31814287  T
Q  249 cacagagactaaagtgaaagtagaaaa 275  Q
    |||| |||||||| ||||| |||||||    
T  31814286 cacatagactaaaatgaaaatagaaaa 31814260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 286
Target Start/End: Original strand, 7412179 - 7412310
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||||||| ||||||| || || ||||||| ||||||||||||||||   |||| | |||||||||||||| ||||| ||| ||||||||      
T  7412179 tgcacttccgttatcactttagtccctaacattaaataattatgttaagtgatgacatgacacatgttttacgatgacatggcatatgatgtgtcacaag 7412278  T
Q  255 gactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||||||||| |||||||| |||| ||||    
T  7412279 gactaaagtgaaaatagaaaatggtcactttg 7412310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 38853842 - 38853967
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||||||| ||||||| ||||||||||||| ||||||||| | |||| | |||| |||||||| | | ||||||  | |||||||||||||     
T  38853842 tgcacttccgttatcaatttagtcactgacgttaaataattatgttaactcatgacgtgacaaaagttttatgctaacaaggagtatgaggtgtcacagg 38853941  T
Q  255 gactaaagtgaaagtagaaaatagtc 280  Q
    ||||||| |||||||||| |||||||    
T  38853942 gactaaattgaaagtagataatagtc 38853967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 17466122 - 17466249
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||||||||||| |||| ||| ||||||| ||||||| ||| | ||||||||||||||||||  |||   ||||||| |||||| ||||| ||||||||    
T  17466122 tgactctgcacttccgttttcactttagtccctgacgtgaaacaattatgttaagtgatgatgtaacactggttttacaatgacatggcatatgaggtgt 17466221  T
Q  249 cacagagactaaagtgaaagtagaaaat 276  Q
    ||||  || |||||| ||||||||||||    
T  17466222 cacatggattaaagtaaaagtagaaaat 17466249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 26585174 - 26585282
Alignment:
Q  164 gttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagt 263  Q
    ||||||| ||||||||||  ||||||||| ||||||||| |||||||| ||||||  ||||| | ||||||||  | ||||||||||||| |||||||||    
T  26585174 gttatcactttagtctctagcgttaaataattatgttaattgatgatgtgacata--ttttatgttgacaaggagtatgaggtgtcacagggactaaagt 26585271  T
Q  264 gaaagtagaaa 274  Q
    |||| ||||||    
T  26585272 gaaaatagaaa 26585282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 33161857 - 33161976
Alignment:
Q  158 actttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataag-ttttacgatgacaaggcatgtgaggtgtcacagaga 256  Q
    |||| |||||||| |||||||  |||||||||||| || ||||||||||||||   ||| ||  |||||| |||||| ||||| |||||||||||| |||    
T  33161857 acttccgttatcactttagtccttgacgttaaataattttgttaagtgatgatataacacaaaattttacaatgacatggcatatgaggtgtcacaaaga 33161956  T
Q  257 ctaaagtgaaagtagaaaat 276  Q
    ||||| ||||||||||||||    
T  33161957 ctaaaatgaaagtagaaaat 33161976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 286
Target Start/End: Original strand, 37607189 - 37607320
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||||||| ||||||| ||||||||| ||| ||||||||| |||||| | |||| | |||||| | | |||||   | |||| |||||||      
T  37607189 tgcacttccgttatcactttagtccctgacgttatataattatgttaactgatgacgtgacaaaggttttatgctaacaagaagtatgagatgtcacaag 37607288  T
Q  255 gactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||||||||||| |||||||||||||| ||||    
T  37607289 gactaaagtgaacgtagaaaatagtcactttg 37607320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 31091569 - 31091507
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||| |||||||| ||||||||||||||||||| |  |||||||||||||||||    
T  31091569 tgactctgcacttccgttatcactttagtctctgacgttaaaaaaatatgttaagtgatgatg 31091507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 12746229 - 12746104
Alignment:
Q  163 cgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaag 262  Q
    |||||||| |||||||  | | |||||||| || |  |||||||| ||| |||| |||||||| | |||||| |  | ||||||||||||| ||||||||    
T  12746229 cgttatcactttagtccataatgttaaataattctagtaagtgattatgtgacaaaagttttatgctgacaaagagtatgaggtgtcacagggactaaag 12746130  T
Q  263 tgaaagtagaaaatagtcattttgat 288  Q
    ||||||||||||||  ||||||||||    
T  12746129 tgaaagtagaaaatgatcattttgat 12746104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 14887505 - 14887408
Alignment:
Q  184 cgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
    ||||||||| || |||||| |||||||| |||| | |||||| | | ||||||  | ||||||||||||| |||||||||||||||||||||| ||||    
T  14887505 cgttaaataattttgttaactgatgatgtgacaaatgttttatgctaacaaggagtatgaggtgtcacagggactaaagtgaaagtagaaaatggtca 14887408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 281
Target Start/End: Complemental strand, 38985031 - 38984898
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaat-agttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtg 247  Q
    ||||||||||||| |||||||| ||||||| || ||||||||| | |||||||||||| ||||| | || || || || ||||| | | ||| ||| |||    
T  38985031 tgactctgcacttccgttatcactttagtcactaacgttaaataaattatgttaagtgttgatgtggcacaaattatatgatgagatgccatatgatgtg 38984932  T
Q  248 tcacagagactaaagtgaaagtagaaaatagtca 281  Q
    ||  | ||||||||||||||||||||||| ||||    
T  38984931 tcgtatagactaaagtgaaagtagaaaattgtca 38984898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 43380696 - 43380785
Alignment:
Q  197 tgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||||||||||| |||||  |||||||||||||  | ||| ||||||||||||   ||||||||||||||||||||| |||| ||||    
T  43380696 tgttaagtgatgatgtgacatgtgttttacgatgacgcgacatatgaggtgtcacatgaactaaagtgaaagtagaaaatggtcactttg 43380785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 31090237 - 31090305
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatga 209  Q
    ||||||| ||||||||||||| |||||| ||||||||| ||||||||||| |  |||||||||||||||    
T  31090237 taagtctctgactctgcacttccgttatgattttagtccctgacgttaaaaaaatatgttaagtgatga 31090305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 39016423 - 39016364
Alignment:
Q  151 actctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgat 210  Q
    ||||||||||| |||||||| ||||||||||||||||||| |  ||||||||||||||||    
T  39016423 actctgcacttccgttatcactttagtctctgacgttaaaaaaatatgttaagtgatgat 39016364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 33163500 - 33163374
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||| |||| || |||||||| |||||||||||||||| | || || ||| ||||||||| | |||| | ||||||  |||||| ||||| | ||||||    
T  33163500 tgactatgcatttccgttatcactttagtctctgacgttgattaattttgtgaagtgatgaagtgacacatgttttagaatgacatggcatataaggtgt 33163401  T
Q  249 cacagagactaaagtgaaagtagaaaa 275  Q
    |||||  || ||||| |||||||||||    
T  33163400 cacaggcaccaaagtcaaagtagaaaa 33163374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 286
Target Start/End: Complemental strand, 21733821 - 21733676
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatg 240  Q
    ||||||| ||||||||||||| ||| |||| ||||||   ||  |||||| | || ||||||||||||||| |||| | |||||| | ||||||||  |     
T  21733821 taagtctctgactctgcacttccgtcatcactttagttgttgcagttaaaaaattctgttaagtgatgatgtgacacatgttttatgctgacaaggagta 21733722  T
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||| |||||||   |||||||||||||||| ||||| |||| ||||    
T  21733721 tgaagtgtcacgatgactaaagtgaaagtaaaaaatggtcactttg 21733676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 31443195 - 31443150
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||    
T  31443195 tgaggtgtcacagtgactaaagtgaaagtagaaaattgtcattttg 31443150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 286
Target Start/End: Complemental strand, 36012865 - 36012728
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||||||||||||| |||| | |||||| |  | ||||||| | ||| |||||||||| ||| || | ||||| ||||||||||   ||| ||| ||||    
T  36012865 tgactctgcactttcattataactttagtattcggcgttaaagaattacgttaagtgataatgtgatacaagttatacgatgacatatcatttgatgtgt 36012766  T
Q  249 cacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    || || ||||||| |||||||||||||| |||| ||||    
T  36012765 cagagggactaaaatgaaagtagaaaatggtcactttg 36012728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 43381181 - 43381096
Alignment:
Q  201 aagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||||||| | || | |||||| ||||||  ||||| ||||||||||||  ||||||||| ||| ||||||||||||||||||    
T  43381181 aagtgatgatgtggcacatgttttatgatgacgtggcatatgaggtgtcacaaggactaaagtaaaaatagaaaatagtcattttg 43381096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 32766213 - 32766165
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattt 284  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  32766213 gcatatgaggtgtcacagagaccaaagtgaaagtagaaaatggtcattt 32766165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 7073712 - 7073787
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgaca 216  Q
    ||||||| ||| ||||||||| |||||||| ||||||| |||||||||| |  || ||||||||||||||| ||||    
T  7073712 taagtctctgattctgcacttccgttatcactttagtccctgacgttaagttattctgttaagtgatgatgtgaca 7073787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 39015081 - 39015148
Alignment:
Q  144 gtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    |||| ||||||||||||||| ||||||||||||| ||| |||||||| |  | |||||||||||||||    
T  39015081 gtctttgactctgcactttcattatcattttagtttctaacgttaaaaatatttgttaagtgatgatg 39015148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 14704153 - 14704203
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  14704153 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatagtcactttg 14704203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 31091502 - 31091452
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||| ||||    
T  31091502 gcatatgaggtgtcacagagaccaaagtgaaagtagaaaatggtcactttg 31091452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 38854876 - 38855002
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    |||||||  ||||||| ||||||| |||| |||||||| ||||||||| | |||| | |||| ||  |||| | | ||||||  | |||||||||||||     
T  38854876 tgcacttatgttatcaatttagtcactgaagttaaataattatgttaactcatgacgtgacaaaaaatttatgctaacaaggagtatgaggtgtcacagg 38854975  T
Q  255 gactaaagtgaaagtagaaaatagtca 281  Q
    | ||||| |||||||||| ||||||||    
T  38854976 ggctaaattgaaagtagataatagtca 38855002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 286
Target Start/End: Complemental strand, 17330280 - 17330144
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatg 240  Q
    ||||||| |||||||||| || |||||||| |||||||  ||||||||| |  || ||||||||||||||| |||         ||  ||| | | |||     
T  17330280 taagtctctgactctgcatttccgttatcactttagtccatgacgttaagttattctgttaagtgatgatgtgac---------acagtgatatgacata 17330190  T
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||||    
T  17330189 tgaggtgtcacagagactaaagtgaaagtaaaaaatggtcactttg 17330144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 34582706 - 34582585
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||||||| ||||||| ||||||||||||| |||| | || |||| ||| | || | |||||| | |||||||   | ||||||||||||      
T  34582706 tgcacttccgttatcactttagtccctgacgttaaataattatatcaactgatcatgtggcaaaggttttatgctgacaagaggtatgaggtgtcacatg 34582607  T
Q  255 gactaaagtgaaagtagaaaat 276  Q
     |||||||| ||||||||||||    
T  34582606 aactaaagtaaaagtagaaaat 34582585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 14704089 - 14704148
Alignment:
Q  151 actctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||| |||||||| ||||||| ||||||||||| |  |||||||||||||||||    
T  14704089 actctgcacttccgttatcactttagtccctgacgttaaa-aaatatgttaagtgatgatg 14704148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 5095974 - 5096017
Alignment:
Q  12 agagagttgtccaaaaattatctcaaaattattgtataaatatc 55  Q
    |||||||||||||||||||||| |||||| |||||| |||||||    
T  5095974 agagagttgtccaaaaattatcacaaaatgattgtacaaatatc 5096017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 2910173 - 2910243
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||||||||||| | || ||| ||||||| ||||||||||| |  | |||||||||||||||    
T  2910173 taagtctctgactctgcacttcctttgtcactttagtccctgacgttaaaaaaatctgttaagtgatgatg 2910243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 24458208 - 24458258
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  24458208 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttg 24458258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 26586331 - 26586285
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgtta 201  Q
    ||||||| |||||||| ||||||||||| ||||||||| ||||||||    
T  26586331 tgcacttccgttatcactttagtctctggcgttaaataattatgtta 26586285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 32765019 - 32765080
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||| |||||||| |||| || ||||||||||| |  |||||||||||||||||    
T  32765019 tgactctgcacttccgttatcactttaatccctgacgttaaa-aaatatgttaagtgatgatg 32765080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 39015153 - 39015203
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  39015153 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcagtttg 39015203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 39257040 - 39256926
Alignment:
Q  172 tttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtag 271  Q
    |||||||| | |||||||||| |||||||||||||||  | |||| | |||||| ||||||| | ||| ||| |||||| |   ||||| |||||| |||    
T  39257040 tttagtctttaacgttaaataattatgttaagtgatggcgtgacagatgttttatgatgacatgacatatgatgtgtcatatgaactaatgtgaaattag 39256941  T
Q  272 aaaatagtcattttg 286  Q
    ||||| |||| ||||    
T  39256940 aaaatggtcactttg 39256926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 12003740 - 12003785
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| |||||||| ||||||||||||| ||||||||||| ||||||    
T  12003740 tgagatgtcacagggactaaagtgaaaatagaaaatagtaattttg 12003785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 24458141 - 24458182
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaa 190  Q
    ||||||| |||||||||||||| |||||||||| ||||||||    
T  24458141 tgactctacactttcgttatcactttagtctctaacgttaaa 24458182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 24459429 - 24459377
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||| |||||||||| || ||| |||||||||||||||||| |||| ||||||    
T  24459429 gcatatgaggtgtcatagggaccaaagtgaaagtagaaaatggtcactttgat 24459377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 32765085 - 32765125
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaat 276  Q
    |||| |||||||||| || ||||||||||||||||||||||    
T  32765085 gcatatgaggtgtcatagggactaaagtgaaagtagaaaat 32765125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 38856403 - 38856283
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    |||||||| ||||||| |||| |||||||||||||||| || ||| || |||| ||| |||| | |||||| | |||||| |  | |||| || ||| |     
T  38856403 tgcacttttgttatcactttaatctctgacgttaaataattctgtaaattgataatgtgacaaaggttttaagctgacaaagagtatgagttgccacggg 38856304  T
Q  255 gactaaagtgaaagtagaaaa 275  Q
     ||||||||||||||| ||||    
T  38856303 aactaaagtgaaagtaaaaaa 38856283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 39999048 - 39999100
Alignment:
Q  164 gttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgaca 216  Q
    ||||||| |||| |||||||||||||| |  ||||||||||||||||| ||||    
T  39999048 gttatcactttaatctctgacgttaaaaaaatatgttaagtgatgatgtgaca 39999100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 286
Target Start/End: Complemental strand, 5965491 - 5965347
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgt 241  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||||||||  ||||||||||| |||||| || | | ||| |||||||||| | ||| |    
T  5965491 aagtctttgactctgcacttccgttatcactttagtctctgacgttaaatgattatgttaagtaatgatgtgatacatgttatacgatgacatgacattt 5965392  T
Q  242 gaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    || |||||||| ||| ||||||||||||||||||| |||||||||    
T  5965391 gatgtgtcacaaagagtaaagtgaaagtagaaaattgtcattttg 5965347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 286
Target Start/End: Original strand, 30134647 - 30134784
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    |||||||||||||  ||||||| |||| | ||| |||||| ||| |||||||| ||||||||| |||| | |||||||||||||| | ||| ||| ||||    
T  30134647 tgactctgcacttctgttatcactttaatatctaacgttatataattatgttaggtgatgatgtgacacatgttttacgatgacatgtcatttgatgtgt 30134746  T
Q  249 cacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  30134747 cacagagactaaagtgaaagtagaaaattgtcactttg 30134784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 274
Target Start/End: Original strand, 5736925 - 5737048
Alignment:
Q  151 actctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtca 250  Q
    ||||| |||||||||||||| ||||||| || |||||||||| || ||||||||||||||| |||| | |||||||||||||| | ||| ||||||||||    
T  5736925 actctacactttcgttatcactttagtccctcacgttaaataattttgttaagtgatgatgtgacacaggttttacgatgacatgacatatgaggtgtca 5737024  T
Q  251 cagagactaaagtgaaagtagaaa 274  Q
    ||  ||||||||| ||||||||||    
T  5737025 caaggactaaagtaaaagtagaaa 5737048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 28619070 - 28619196
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    |||||||||||||||||||||| ||||||||| | ||||||||| || ||||||||||||||| | || | |||||||||||||| ||||| ||| || |    
T  28619070 tgactctgcactttcgttatcactttagtctcggccgttaaataattttgttaagtgatgatgtgtcacatgttttacgatgacatggcatttgatgtat 28619169  T
Q  249 cacagagactaaagtgaaagtagaaaa 275  Q
    || || |||||||||||| ||||||||    
T  28619170 catagggactaaagtgaatgtagaaaa 28619196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 286
Target Start/End: Original strand, 28524845 - 28524976
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||||||||||||||||||||||||||||| || |||||| |||||||| | || |  ||||| | |||||| |  | ||| |||||| |      
T  28524845 tgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgtggcaaagattttatgttgacaaagagtatgaagtgtcagatg 28524944  T
Q  255 gactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||||||||||||||| ||||| |||||||||    
T  28524945 gactaaagtgaaagtaaaaaattgtcattttg 28524976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 1953020 - 1952950
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    |||||||||||||||| |||| |||||||| |||||||||||||||||||||  | |||||||||||||||    
T  1953020 taagtctatgactctgtacttccgttatcactttagtctctgacgttaaataaatctgttaagtgatgatg 1952950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 286
Target Start/End: Complemental strand, 5738065 - 5737928
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    |||||||| |||| |||||||| || ||||| || ||||||||| || |||||||||||||||  ||| | | | || ||||||| | ||| ||||||||    
T  5738065 tgactctgtacttccgttatcacttcagtctttggcgttaaataattctgttaagtgatgatgtaacacatggtatatgatgacatgacatatgaggtgt 5737966  T
Q  249 cacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||  ||||||||| |||||| ||||| |||| ||||    
T  5737965 cacatggactaaagtaaaagtaaaaaatggtcactttg 5737928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 39138700 - 39138567
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||| ||| |||||||| || | ||||| | ||| ||||| ||| |||| |||| |||||||| | |||||| |  | ||||||||||||      
T  39138700 tgcacttccgttgtcagtttagtctttggcattaaaaacttacgttaattgacgatgtgacaaaagttttatgctgacaaagtgtatgaggtgtcacaag 39138601  T
Q  255 gactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||||||||||||||||||||| |||| ||||||    
T  39138600 gactaaagtgaaagtagaaaatggtcactttgat 39138567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 286
Target Start/End: Original strand, 45476235 - 45476380
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatg 240  Q
    ||||||| |||||||||||||  ||||||| ||||||||||  ||||||| |  | ||||||||||||||| | |  | || ||| | |||| |||  |     
T  45476235 taagtctctgactctgcacttctgttatcactttagtctctcccgttaaaaaaatctgttaagtgatgatgtggcgcatgtgttatgctgacgaggatta 45476334  T
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
     |||||||||||||||| |||||||||||||||||| |||| ||||    
T  45476335 agaggtgtcacagagaccaaagtgaaagtagaaaattgtcactttg 45476380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 32564506 - 32564415
Alignment:
Q  194 ttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcatttt 285  Q
    |||||||||||||||||| |||| | |||||| ||||||| | ||| ||| ||||||||  ||||||||||| ||||||||||  |||||||    
T  32564506 ttatgttaagtgatgatgtgacacaggttttaggatgacatgccatatgatgtgtcacatggactaaagtgatagtagaaaatgatcatttt 32564415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 41122777 - 41122716
Alignment:
Q  165 ttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttac 226  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||| || | |||||||||    
T  41122777 ttatcattttagtgtttgacgttaaataattatgttaagtgatgatgtgaaacaagttttac 41122716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 9626488 - 9626378
Alignment:
Q  163 cgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaag 262  Q
    |||||| | |||||| |||||||||||||| | |||||||  ||||||| |||| |||||||| | |||||| |  | ||||||||||||   |||||||    
T  9626488 cgttattactttagtttctgacgttaaataat-atgttaaccgatgatgtgacaaaagttttatgctgacaaagagtatgaggtgtcacatgaactaaag 9626390  T
Q  263 tgaaagtagaaa 274  Q
    ||||||||||||    
T  9626389 tgaaagtagaaa 9626378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 31075318 - 31075208
Alignment:
Q  163 cgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaag 262  Q
    |||||||| ||||||| ||||||||||||| |||| |||| |||||| | |||| | |||||| | ||||||||  |  |||||||||||  |||||||     
T  31075318 cgttatcactttagtcactgacgttaaataattatattaactgatgacgtgacaaaggttttatggtgacaaggagtacgaggtgtcacaaggactaaa- 31075220  T
Q  263 tgaaagtagaaa 274  Q
    ||||||||||||    
T  31075219 tgaaagtagaaa 31075208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 32898487 - 32898425
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||| |||||||| ||||||| ||||||||||| |  | |||||||||||||||    
T  32898487 tgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatg 32898425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 31074081 - 31074202
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    |||||||  ||||||| |||||||||||   ||||||| || |||||| |||||||| | || | |||||| | | ||||||  | ||||||||||| |     
T  31074081 tgcacttctgttatcactttagtctctggaattaaataattttgttaactgatgatgtggcaaatgttttatgctaacaaggggtatgaggtgtcacggg 31074180  T
Q  255 gactaaagtgaaagtagaaaat 276  Q
    ||||||||||||| ||||||||    
T  31074181 gactaaagtgaaaatagaaaat 31074202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 33314987 - 33315076
Alignment:
Q  197 tgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||||||||| | |||| | |||||  | ||||||||  | ||||||||||||  ||| ||||||||||||||||||||||| ||||    
T  33314987 tgttaagtgatgaagtgacacatgttttttgctgacaaggagtatgaggtgtcacatggaccaaagtgaaagtagaaaatagtcactttg 33315076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 10406354 - 10406404
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||| ||||    
T  10406354 gcatatgaggtgtcacagggaccaaagtgatagtagaaaatagtcactttg 10406404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 24199082 - 24199148
Alignment:
Q  220 gttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||||| | ||||||||  | |||||||||||||| ||||||||||||||| |||||  ||||||||    
T  24199082 gttttatgctgacaaggggtatgaggtgtcacagatactaaagtgaaagtaaaaaatgatcattttg 24199148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 35177476 - 35177538
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||| |||||||| ||||||| |||||||||||    | |||||||||||||||    
T  35177476 tgactctgcacttccgttatcactttagtccctgacgttaaaataatctgttaagtgatgatg 35177538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 45476605 - 45476543
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    |||||||||||||   |||||| ||||||||||| ||||||| |  |||||||||||||||||    
T  45476605 tgactctgcacttctcttatcactttagtctctgtcgttaaaaaaatatgttaagtgatgatg 45476543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 2552187 - 2552231
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||    
T  2552187 tgaggtgtcacag-gactaaagtgaaagtagaaaattgtcactttg 2552231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 2561339 - 2561384
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||| ||||||| ||||||| ||||||||||||||||| ||||||    
T  2561339 tgaggcgtcacagtgactaaaatgaaagtagaaaatagtgattttg 2561384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 20065660 - 20065623
Alignment:
Q  18 ttgtccaaaaattatctcaaaattattgtataaatatc 55  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  20065660 ttgtcaaaaaattatcacaaaattattgtataaatatc 20065623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 28526506 - 28526449
Alignment:
Q  229 tgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||||||| || |||||||||| || ||||||||||||| ||||||||  ||||||||    
T  28526506 tgacaaggaatatgaggtgtcatagtgactaaagtgaaaatagaaaatgatcattttg 28526449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 8569495 - 8569539
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgt 199  Q
    |||||||||||||||| ||||||| ||||||||||| | ||||||    
T  8569495 tgcactttcgttatcagtttagtccctgacgttaaaaacttatgt 8569539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 36032879 - 36032919
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
    ||||||||||||| ||| |||||||||||||||||| ||||    
T  36032879 tgaggtgtcacagggacgaaagtgaaagtagaaaattgtca 36032919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 39869002 - 39869133
Alignment:
Q  150 gactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtc 249  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |  ||||| ||||||| | ||| | |||||||    
T  39869002 gactctgcacttccgttatcactttagtctctgacgttaaataattatgttaagtgatgatgtgacacatattttatgatgacatgacatatcaggtgtc 39869101  T
Q  250 acagagactaaagtgaaagtagaaaatagtca 281  Q
    |||  ||||||| |||||||| ||||||||||    
T  39869102 acaatgactaaattgaaagtataaaatagtca 39869133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 19050320 - 19050444
Alignment:
Q  150 gactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtc 249  Q
    |||||||||||| |||||||| ||||||||| ||||||||||| || | ||||||||||||| |||||  |||||||||||| | ||||| |||||||||    
T  19050320 gactctgcacttccgttatcactttagtctccgacgttaaataattctattaagtgatgatgtgacat--gttttacgatgatatggcatatgaggtgtc 19050417  T
Q  250 acagagactaaagtgaaagtagaaaat 276  Q
    |||  |||||||||||||||| |||||    
T  19050418 acatggactaaagtgaaagtataaaat 19050444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 286
Target Start/End: Original strand, 4701847 - 4701981
Alignment:
Q  150 gactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtc 249  Q
    |||| ||||||| || ||||| ||||||| |||| |||||||| || ||||||||||||||   ||| |||||||||||||||  ||||  ||| |||||    
T  4701847 gactatgcacttccgctatcactttagtccctgatgttaaataattctgttaagtgatgatattacacaagttttacgatgacgtggca--tgaagtgtc 4701944  T
Q  250 acagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||  ||||||||||||||||||||||||||| ||||    
T  4701945 acatggactaaagtgaaagtagaaaatagtcactttg 4701981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 286
Target Start/End: Complemental strand, 21623153 - 21623022
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||||||||| | |||||| | || ||||||||   ||||||||  | ||||||||||||||    
T  21623153 tgcacttctgttatcactttagtccccgacgttaaataattatgttaactaatgatgtggcacaagttttatactgacaaggagtatgaggtgtcacaga 21623054  T
Q  255 gactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||| |||||||||||||| |||| ||||    
T  21623053 gactaaaatgaaagtagaaaatggtcactttg 21623022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 286
Target Start/End: Complemental strand, 20599940 - 20599811
Alignment:
Q  157 cactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagaga 256  Q
    |||||| ||||||| ||||||| | ||  ||||||| |||||||||||||||||| |||||| ||| | | |||||| | ||| ||||||||||||| ||    
T  20599940 cactttggttatcactttagtccccgatattaaataattatgttaagtgatgatgtgacataggttatgcaatgacatgacatatgaggtgtcacaggga 20599841  T
Q  257 ctaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||| |||||||| ||||| |||| ||||    
T  20599840 ctaaaatgaaagtaaaaaatggtcactttg 20599811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 288
Target Start/End: Original strand, 32244361 - 32244494
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||||||| ||| |||  | |||||||||| |||||||||||||||| |||||  | |||||| | |||||| |  | || |||||||||||    
T  32244361 tgcacttccgttatcactttggtccataacgttaaataattatgttaagtgatgacgcgacgaaggttttatgctgacaaagagtatggggtgtcacaga 32244460  T
Q  255 gactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||||||||||||||| ||||| |||| ||||||    
T  32244461 gactaaagtgaaagtaaaaaatggtcactttgat 32244494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 288
Target Start/End: Original strand, 21621910 - 21622043
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| |||||||| ||||||| |||| |||||||| ||||||||| |||||||| |||| |  ||||||| |||| |||  | ||| ||||||||      
T  21621910 tgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgtgacaaagattttacgctgacgaggagtatgatgtgtcacaag 21622009  T
Q  255 gactaaagtgaaagtagaaaatagtcattttgat 288  Q
     ||||||||||||||| ||||| |||| ||||||    
T  21622010 cactaaagtgaaagtataaaatggtcactttgat 21622043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 56041054 - 56041147
Alignment:
Q  158 actttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcac 251  Q
    ||||| |||||  ||||||||| |||||||||||| |||||||||||||||||| |||| ||||||||| |||||| | ||| ||| |||||||    
T  56041054 acttttgttatagttttagtctgtgacgttaaataattatgttaagtgatgatgtgacacaagttttacaatgacatgacatatgaagtgtcac 56041147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 39870716 - 39870590
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||||||||||| || ||||| || |||||| | ||||||||| || |||| ||| |||||| || | | |||||||||||||| | ||| ||||||||    
T  39870716 tgactctgcacttccgatatcacttcagtctcaggcgttaaataattctgttgagtaatgatgtgatacacgttttacgatgacatgacatatgaggtgt 39870617  T
Q  249 cacagagactaaagtgaaagtagaaaa 275  Q
    ||||  || |||||||| |||||||||    
T  39870616 cacaaggaataaagtgagagtagaaaa 39870590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 32244716 - 32244603
Alignment:
Q  163 cgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaag 262  Q
    |||||||| ||||||| ||||||||||||| || ||||||  ||||| | |||| |  ||||| | ||||||||  | ||||||||||||| ||||||||    
T  32244716 cgttatcactttagtccctgacgttaaataattttgttaaccgatgacgtgacaaagattttatgctgacaaggagtatgaggtgtcacagtgactaaag 32244617  T
Q  263 tgaaagtagaaaat 276  Q
    |||||||| |||||    
T  32244616 tgaaagtaaaaaat 32244603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 44158585 - 44158707
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    |||||||  ||||| ||||| | |||| || || |||||||||| |||||||||   |||||| ||||||||||||||||||||| | ||| ||| ||||    
T  44158585 tgactctatacttttgttattactttaatccctaacgttaaataattatgttaaacaatgatgtgacataagttttacgatgacatgacatatgatgtgt 44158684  T
Q  249 cacagagactaaagtgaaagtag 271  Q
    |||| | ||| || |||||||||    
T  44158685 cacataaacttaaatgaaagtag 44158707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 277
Target Start/End: Complemental strand, 26172992 - 26172854
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgtt--aagtgatgatgcgacataagttttacgatgacaaggca 238  Q
    ||||||| ||||||||||||| |||||||| |||||||  || ||||||| | |||||||  ||||||| ||| | || | |||||| |   ||||||      
T  26172992 taagtctctgactctgcacttccgttatcactttagtccatgccgttaaaaaattatgttaaaagtgataatgtggcacatgttttatgtcaacaaggag 26172893  T
Q  239 tgtgaggtgtcacagagactaaagtgaaagtagaaaata 277  Q
    | ||||||||||||  ||||||||||| |||||||||||    
T  26172892 tatgaggtgtcacaatgactaaagtgacagtagaaaata 26172854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 53770407 - 53770470
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    |||||||||||||||||||| | |||||| | ||||||||| ||||||||| || |||||||||    
T  53770407 aagtctatgactctgcacttccattatcactctagtctctgccgttaaataattctgttaagtg 53770470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 286
Target Start/End: Complemental strand, 4703266 - 4703122
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgt 241  Q
    |||||| ||||| | ||||| |||||||| ||||||||||| | ||||||| || | ||||||||||||| |     ||||||| ||||||  | ||| |    
T  4703266 aagtctttgactgtacacttccgttatcactttagtctctggcattaaataattctattaagtgatgatgtggtgcgagttttatgatgacgtgacatat 4703167  T
Q  242 gaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||| ||||| |  |||||||||||||||| ||||| |||| ||||    
T  4703166 gagatgtcatatggactaaagtgaaagtataaaattgtcactttg 4703122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 26685464 - 26685408
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    ||||| ||||||| |||||||| ||||||||||||| ||||||| || |||||||||    
T  26685464 tgactatgcacttccgttatcactttagtctctgacattaaataattctgttaagtg 26685408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 53771091 - 53771035
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    ||||||||||||| |||||||| |||||||  |||||||||||| || |||||||||    
T  53771091 tgactctgcacttccgttatcactttagtcattgacgttaaataattctgttaagtg 53771035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 25810383 - 25810340
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattt 284  Q
    ||||||||||||  |||||||||||||||| |||||||||||||    
T  25810383 tgaggtgtcacatggactaaagtgaaagtataaaatagtcattt 25810340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 42278130 - 42278192
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||| |||||||| |||| || ||||||||||| |  | |||||||||||||||    
T  42278130 tgactctgcacttccgttatcactttaatccctgacgttaaaaaaatctgttaagtgatgatg 42278192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 48740060 - 48740006
Alignment:
Q  151 actctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    |||||||||||  ||||||| ||||||| ||||||||||||| || |||||||||    
T  48740060 actctgcacttctgttatcactttagtccctgacgttaaataattctgttaagtg 48740006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 50694834 - 50694892
Alignment:
Q  153 tctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||| |||||||  ||||||| ||||||||||| | || |||||||||||||||    
T  50694834 tctgcacttccgttatctctttagtccctgacgttaaaaaattctgttaagtgatgatg 50694892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 26685410 - 26685374
Alignment:
Q  245 gtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  26685410 gtgtcacagggactaaaatgaaagtagaaaatagtca 26685374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 48740006 - 48739970
Alignment:
Q  245 gtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  48740006 gtgtcacaaagactaaagtgaaagtaaaaaatagtca 48739970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 5680 - 5817
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||||| ||||| |||||||| ||||||||||| ||||||||| |||||||| |||||||||||||| |  ||||||||||||| | ||  ||||||||    
T  5680 tgactctacacttccgttatcactttagtctctggcgttaaataattatgttatgtgatgatgcgacacatattttacgatgacatgaca--tgaggtgt 5777  T
Q  249 cacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||| ||||||||||||||||| ||| | |||| ||||||    
T  5778 cacatagactaaagtgaaagtaaaaagtggtcactttgat 5817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 6253 - 6189
Alignment:
Q  188 aaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcaca 252  Q
    |||||||||| ||||||||||||| |||||| ||||||| |||||| | ||| ||||||| ||||    
T  6253 aaatagttatattaagtgatgatgtgacataggttttacaatgacatgacatatgaggtgacaca 6189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 6680559 - 6680439
Alignment:
Q  165 ttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtg 264  Q
    |||||| |||||||| ||| |||||||| || ||||||||| ||||| ||||||| ||||||||||||| | ||  ||| |||||| || ||||||||||    
T  6680559 ttatcactttagtctttgatgttaaataattctgttaagtgctgatgtgacataaattttacgatgacatgacaattgatgtgtcaaagggactaaagtg 6680460  T
Q  265 aaagtagaaaatagtcatttt 285  Q
    |||||||||||||||||||||    
T  6680459 aaagtagaaaatagtcatttt 6680439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 288
Target Start/End: Complemental strand, 12223741 - 12223602
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    |||||||||| || |||||| | ||||||| |||| |||||||| || ||||||||||||||| |||| | |||||||||||||| | ||| |||| |||    
T  12223741 tgactctgcagttccgttattactttagtcactgatgttaaataattctgttaagtgatgatgtgacacaggttttacgatgacatgacatatgagttgt 12223642  T
Q  249 cacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||||  ||||||||||||||| ||||| |||| ||||||    
T  12223641 cacaggaactaaagtgaaagtaaaaaattgtcactttgat 12223602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 34888963 - 34888840
Alignment:
Q  151 actctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtca 250  Q
    ||||||||||| |||||||| |||||||  ||||||| |||| |||||||||||||||| | |||||| |||||||||||| |  |||| ||||||||||    
T  34888963 actctgcacttccgttatcactttagtccttgacgtttaataattatgttaagtgatgacgtgacataggttttacgatgatatagcatatgaggtgtca 34888864  T
Q  251 cagagactaaagtgaaagtagaaa 274  Q
    ||  ||||| ||||||| ||||||    
T  34888863 catggactacagtgaaattagaaa 34888840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 32793267 - 32793389
Alignment:
Q  164 gttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagt 263  Q
    ||||||| |||||||| || ||||||||| ||||||||| |||||||| | || | ||||||| |||||| | ||||||||||||||||  |||||||||    
T  32793267 gttatcactttagtctttggcgttaaataattatgttaactgatgatgtggcacacgttttacaatgacatgacatgtgaggtgtcacatggactaaagt 32793366  T
Q  264 gaaagtagaaaatagtcattttg 286  Q
    ||||||| |||||  ||||||||    
T  32793367 gaaagtaaaaaatgatcattttg 32793389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 48249654 - 48249771
Alignment:
Q  164 gttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagt 263  Q
    ||||| |||||||||| ||| |||||||| |||||||||||||||||| |||| || ||||||||||| | | ||| ||||||||||||   ||||||||    
T  48249654 gttattattttagtctttgatgttaaataattatgttaagtgatgatgtgacacaaattttacgatgatatgtcatatgaggtgtcacatgaactaaagt 48249753  T
Q  264 gaaagtagaaaatagtca 281  Q
     |||||||| ||| ||||    
T  48249754 aaaagtagagaatggtca 48249771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 286
Target Start/End: Complemental strand, 8048825 - 8048689
Alignment:
Q  150 gactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtc 249  Q
    |||||||||||| |||||||| |||| ||| | |||||||||| || | ||||||||||||| | || | ||| ||||||||||   ||| ||| |||||    
T  8048825 gactctgcacttccgttatcactttaatctttaacgttaaataattctattaagtgatgatgtgtcacatgttatacgatgacataacatatgatgtgtc 8048726  T
Q  250 acagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||  |||||||||||||||||||||| |||| ||||    
T  8048725 acatggactaaagtgaaagtagaaaatggtcactttg 8048689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 286
Target Start/End: Complemental strand, 19433975 - 19433840
Alignment:
Q  150 gactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtc 249  Q
    ||||| ||||||  ||||||| |||||||| || ||||||||| || ||||||||||||||| |||| |  ||||||||||||| | ||| ||| ||||     
T  19433975 gactccgcacttcagttatcactttagtctatggcgttaaataattctgttaagtgatgatgtgacacatattttacgatgacatgacatctgatgtgtg 19433876  T
Q  250 acagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    | || |||||||||| ||||||||||| |||||||||    
T  19433875 agagggactaaagtg-aagtagaaaatggtcattttg 19433840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 8046897 - 8047035
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||||| || || ||||| ||||||||||  |||| ||||||| |||||||||||||| ||| |||| | ||| |||||||| | | ||| ||| || |    
T  8046897 tgactctacatttgcgttaacattttagtcattgacattaaataattatgttaagtgataatgtgacacatgttatacgatgatatgtcatatgatgtat 8046996  T
Q  249 cacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    || |||||||||| ||||||||||||||||||| ||||||    
T  8046997 ca-agagactaaattgaaagtagaaaatagtcactttgat 8047035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 13578362 - 13578295
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacat 217  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||    
T  13578362 tgactctgcacttccgttatcactttagtc-ctgacgttaaataattatgttaagtgatgatgtgacat 13578295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 12220097 - 12220187
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgaca 233  Q
    |||||| |||||||||||||  | ||||| |||||||| |||||||||||| || ||||||||||||||| |||| | ||||||||||||||    
T  12220097 aagtctctgactctgcacttctgatatcactttagtct-tgacgttaaataattttgttaagtgatgatgtgacacatgttttacgatgaca 12220187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 27067869 - 27067995
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||||| |||||| ||||||||||||| ||||||| ||||| |||  | ||||| |||| | | |||| | |||||| |  | ||  ||||||||||    
T  27067869 tgcactttcattatcactttagtctctgacattaaataattatgctaacgggtgatgtgacaaatggtttatgctgacaaagagtatggtgtgtcacaga 27067968  T
Q  255 gactaaagtgaaagtagaaaatagtca 281  Q
    |||||||||||||||||||||| ||||    
T  27067969 gactaaagtgaaagtagaaaatggtca 27067995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 27210444 - 27210318
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||||| |||||| ||||||||||||| ||||||| ||||| |||  | ||||| |||| | | |||| | |||||| |  | ||  ||||||||||    
T  27210444 tgcactttcattatcactttagtctctgacattaaataattatgctaacgggtgatgtgacaaatggtttatgctgacaaagagtatggtgtgtcacaga 27210345  T
Q  255 gactaaagtgaaagtagaaaatagtca 281  Q
    |||||||||||||||||||||| ||||    
T  27210344 gactaaagtgaaagtagaaaatggtca 27210318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 10899123 - 10899053
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||||||||||| |||||||| ||||||| ||||||||||| |  | |||||||||||||||    
T  10899123 taagtctctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatg 10899053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 42477461 - 42477523
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||| ||||||||||||| || ||||||||||| |  |||||||||||||||||    
T  42477461 tgactctgcacttccgttatcattttaatccctgacgttaaaaaaatatgttaagtgatgatg 42477523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 48788722 - 48788652
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||||||| |  | ||||| |||||||||    
T  48788722 taagtctctgactctgcacttccgttatcactttagtctctgacgttaaaaaaatttgttaggtgatgatg 48788652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 8879570 - 8879461
Alignment:
Q  164 gttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagt 263  Q
    ||||||| ||||||| ||||||||||||| || |||||| | ||||   | || | |||||| |||||||||| || |||||||||| | ||| ||||||    
T  8879570 gttatcactttagtccctgacgttaaataattttgttaactaatgagatggcaaaggttttatgatgacaaggaatatgaggtgtcatatagagtaaagt 8879471  T
Q  264 gaaagtagaa 273  Q
    ||||||||||    
T  8879470 gaaagtagaa 8879461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 24287567 - 24287688
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    |||||||  ||||||| |||||||  |||||||||||| ||||||||| |||| ||| | || ||   ||| |  |||||||  | |||||||||||||     
T  24287567 tgcacttaagttatcactttagtccttgacgttaaataattatgttaattgataatgaggcaaaaaaattatgccgacaaggagtatgaggtgtcacagg 24287666  T
Q  255 gactaaagtgaaagtagaaaat 276  Q
    ||||||||||||||||||||||    
T  24287667 gactaaagtgaaagtagaaaat 24287688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 33060899 - 33060959
Alignment:
Q  157 cactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacat 217  Q
    ||||| |||||||| ||||||||||||||||||||| || |||||| |||||||| |||||    
T  33060899 cacttccgttatcactttagtctctgacgttaaataattctgttaaatgatgatgtgacat 33060959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 34707697 - 34707808
Alignment:
Q  164 gttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagt 263  Q
    ||||||| ||||||||||||||||||||| || |||||| |||| |||   || | ||| ||||||||| ||| || ||| ||||||||| || ||||||    
T  34707697 gttatcactttagtctctgacgttaaataattttgttaaatgataatgttgcacaggttatacgatgac-agggatttgatgtgtcacagggaataaagt 34707795  T
Q  264 gaaagtagaaaat 276  Q
    |||| ||||||||    
T  34707796 gaaaatagaaaat 34707808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 43457615 - 43457666
Alignment:
Q  235 ggcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||| ||||    
T  43457615 ggcatatgaggtgtcacagagactaaagtgaaagtaaaaaatggtcactttg 43457666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 45584539 - 45584476
Alignment:
Q  148 atgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    |||||||||||||| |||||||| ||||||| ||||||||||| |  | |||||||||||||||    
T  45584539 atgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatg 45584476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 5930174 - 5930051
Alignment:
Q  150 gactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggc----atgtgagg 245  Q
    |||| ||||||| |||||||| ||||||| ||| | ||||||| || ||||||||||||||| | || | ||||||||||| |  | |    || |||||    
T  5930174 gactgtgcacttccgttatcactttagtccctgccattaaataattctgttaagtgatgatgtggcacaggttttacgatgtcgtgacatatatatgagg 5930075  T
Q  246 tgtcacagagactaaagtgaaagt 269  Q
    ||||||| ||||||||||||||||    
T  5930074 tgtcacatagactaaagtgaaagt 5930051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 7258348 - 7258418
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| |||||||||||||  ||||||| ||||||| ||||||||||| |  | |||||||||||||||    
T  7258348 taagtctctgactctgcacttctgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatg 7258418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 33607672 - 33607557
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagtta--------tgttaagtgatgatgcgacataagttttacgatgaca 233  Q
    |||||| ||| ||||||||| |||||||||||||| | ||||||||||||| |||        ||||||||||||||| |||| | ||||||||| ||||    
T  33607672 aagtctctgattctgcacttccgttatcattttagaccctgacgttaaataattaaataattatgttaagtgatgatgtgacacaggttttacgaagaca 33607573  T
Q  234 aggcatgtgaggtgtc 249  Q
      |||| |||||||||    
T  33607572 ttgcatatgaggtgtc 33607557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 276
Target Start/End: Complemental strand, 34710400 - 34710318
Alignment:
Q  194 ttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaat 276  Q
    ||||||||||||||||||   |||| ||| || ||||||  | ||| ||| |||||||||||||||||||||||||| |||||    
T  34710400 ttatgttaagtgatgatgtagcataggttatatgatgacgtgacatttgatgtgtcacagagactaaagtgaaagtaaaaaat 34710318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 24288902 - 24288769
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    ||||||| | |||||| |||| |||||| ||||| ||| || |||||| |||||||| |||| | |||||| | ||||||||  | ||| |||| |||      
T  24288902 tgcacttccattatcactttattctctggcgttatataattctgttaactgatgatgtgacaaaggttttatgctgacaaggagtatgatgtgtgacatg 24288803  T
Q  255 gactaaagtgaaagtagaaaatagtcattttgat 288  Q
    ||||||| | |||||||||||| || ||||||||    
T  24288802 gactaaaataaaagtagaaaatggtaattttgat 24288769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 48647493 - 48647424
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgat 210  Q
    ||||||| | |||||||||||| ||||||| ||||||| ||||||||||| |  | ||||||||||||||    
T  48647493 taagtctctcactctgcacttttgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgat 48647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 8375569 - 8375533
Alignment:
Q  245 gtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
    |||||||||||||||||||||||||||||||| ||||    
T  8375569 gtgtcacagagactaaagtgaaagtagaaaatggtca 8375533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 7258423 - 7258473
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  7258423 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttg 7258473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 7259726 - 7259664
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||| |||||||| ||||||| ||||||||||| |  | |||||||||||||||    
T  7259726 tgactctacacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatg 7259664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 30925058 - 30924989
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||| ||||||| |||||| | ||||||||||||||||||| |  | |||||||||||||||    
T  30925058 taagtctctgactatgcacttccgttattactttagtctctgacgttaaa-aaatctgttaagtgatgatg 30924989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 35727772 - 35727841
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||||||||| | |||||||| ||||||| ||||||||||| |  | |||||||||||||||    
T  35727772 taagtctctgactctgcacatccgttatcactttagtc-ctgacgttaaaaatctctgttaagtgatgatg 35727841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 44529124 - 44529178
Alignment:
Q  164 gttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacata 218  Q
    ||||||| ||||||| ||||||||||||| || ||||||| ||||||| ||||||    
T  44529124 gttatcactttagtccctgacgttaaataattttgttaagcgatgatgtgacata 44529178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 48646130 - 48646192
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||| |||||||| ||||||||||| ||||||| |  ||| |||||||||||||    
T  48646130 tgactctacacttccgttatcactttagtctctgtcgttaaaaaaatatattaagtgatgatg 48646192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 46286576 - 46286645
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgat 210  Q
    ||||||| |||||||||||||  ||||||| |||| |||||  ||||||| |  ||||||||||||||||    
T  46286576 taagtctctgactctgcacttctgttatcactttaatctctaccgttaaaaaaatatgttaagtgatgat 46286645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 8375625 - 8375569
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    ||||||||||||| |||||||| |||||||   ||||||||||| || |||||||||    
T  8375625 tgactctgcacttccgttatcaatttagtccgcgacgttaaataattttgttaagtg 8375569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 9365242 - 9365202
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
    |||||||||||| ||| ||||||||||||||||||| ||||    
T  9365242 tgaggtgtcacacagattaaagtgaaagtagaaaattgtca 9365202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 30924984 - 30924932
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||| ||||||||||||| ||  |||||||||||||||||| |||| ||||||    
T  30924984 gcatatgaggtgtcacagtgatcaaagtgaaagtagaaaatggtcactttgat 30924932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 35727846 - 35727898
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||| ||||||||||||| ||| ||||||| |||||||||| |||| ||||||    
T  35727846 gcatatgaggtgtcacagggaccaaagtgatagtagaaaatggtcactttgat 35727898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 39824306 - 39824342
Alignment:
Q  245 gtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  39824306 gtgtcacagggactaaagtgaaagtagaaaatggtca 39824342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 42477528 - 42477568
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaat 276  Q
    |||| ||||||||||||| ||| ||||||||||||||||||    
T  42477528 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaat 42477568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 43461770 - 43461730
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaa 189  Q
    ||||| ||||||| |||||||| ||||||||||||||||||    
T  43461770 tgactatgcacttccgttatcactttagtctctgacgttaa 43461730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 48777405 - 48777457
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||| ||||||||||||| ||| ||||||||| |||||||| |||| ||||||    
T  48777405 gcatatgaggtgtcacagggaccaaagtgaaaatagaaaatggtcactttgat 48777457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 276
Target Start/End: Original strand, 10855895 - 10856009
Alignment:
Q  157 cactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagaga 256  Q
    |||||| ||||||  ||||||| ||||||||||||| |||||||||||||| ||| |||| |||||||||||||||| ||||| ||||||||||||        
T  10855895 cacttttgttatcgctttagtccctgacgttaaataattatgttaagtgatcatgtgacacaagttttacgatgacatggcatatgaggtgtcaca---- 10855990  T
Q  257 ctaaagtgaaagtagaaaat 276  Q
     |||||||||||||||||||    
T  10855991 -taaagtgaaagtagaaaat 10856009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 281
Target Start/End: Complemental strand, 31240036 - 31239897
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgt 241  Q
    |||||| |||||||||| || |||||||||||| ||| | ||||||||||  || ||||||||||||||| |||| |  ||||||||||||| | ||| |    
T  31240036 aagtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgtgacacatattttacgatgacatgacatat 31239937  T
Q  242 gaggtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
     ||||||||||   |||||||| |||||||||||| ||||    
T  31239936 aaggtgtcacatgaactaaagtcaaagtagaaaatggtca 31239897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 24940479 - 24940602
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||||||||||| | | |||| |||||| |||  ||||||||| ||||||||||||||||||  ||| |  ||||||||||||| | ||| | ||||||    
T  24940479 tgactctgcacttccttcatcactttagtttctagcgttaaataattatgttaagtgatgatgtcacaca--ttttacgatgacatgacatataaggtgt 24940576  T
Q  249 cacagagactaaagtgaaagtagaaa 274  Q
    ||||   | |||||| ||||||||||    
T  24940577 cacatgaaataaagttaaagtagaaa 24940602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 19600189 - 19600149
Alignment:
Q  246 tgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||||||| |||||||||||||||||||||| |||| ||||    
T  19600189 tgtcacagggactaaagtgaaagtagaaaatggtcactttg 19600149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 30748073 - 30748121
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaa 190  Q
    |||||| ||||||| |||||||||||||| ||||||| ||| |||||||    
T  30748073 aagtctctgactctacactttcgttatcactttagtcgctgccgttaaa 30748121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 31219194 - 31219146
Alignment:
Q  157 cactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    ||||| |||||||| ||||||||||||||||||||| || | |||||||    
T  31219194 cacttccgttatcactttagtctctgacgttaaataattctcttaagtg 31219146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 612310 - 612422
Alignment:
Q  164 gttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagt 263  Q
    ||||||| ||||||  || || ||||||| |||||||||||||||||| ||||   |||||||||||||| | ||  |||||||||||||||||||||||    
T  612310 gttatcactttagttcctcacattaaataattatgttaagtgatgatgtgacacgtgttttacgatgacatgacacatgaggtgtcacagagactaaagt 612409  T
Q  264 gaaagtagaaaat 276  Q
    |||||||||||||    
T  612410 gaaagtagaaaat 612422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 276
Target Start/End: Original strand, 3671111 - 3671246
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatg 240  Q
    ||||||||||||||| ||||| |||||||| |||| || ||| ||||||| | |||||||||||||||||| |||| | |||||| | ||||||||  |     
T  3671111 taagtctatgactctccacttccgttatcactttaatccctgccgttaaaaaattatgttaagtgatgatgtgacacatgttttatgctgacaaggggta 3671210  T
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaat 276  Q
    |||  |||||| | ||||||||||||||||||||||    
T  3671211 tgacatgtcacggggactaaagtgaaagtagaaaat 3671246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 286
Target Start/End: Original strand, 20464150 - 20464287
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    |||||||||||||  ||||||| |||||||   |||||||||||  | ||||||||||||||| |||| | |||||||||| ||| | |||  ||||| |    
T  20464150 tgactctgcacttctgttatcactttagtccacgacgttaaataactctgttaagtgatgatgtgacacatgttttacgataacatgacatacgaggtat 20464249  T
Q  249 cacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||||||||| |||||||||||||| |||| ||||    
T  20464250 cacagagactaaaatgaaagtagaaaatggtcactttg 20464287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 36827509 - 36827390
Alignment:
Q  157 cactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagaga 256  Q
    ||||| |||||||| |||||||||||| |||||||| || ||||||||||||||| |||| | |||||| | ||| ||||   |||| || |||||| ||    
T  36827509 cacttccgttatcactttagtctctgatgttaaataattttgttaagtgatgatgtgacaaatgttttatgctgagaaggagcgtgaagtatcacaggga 36827410  T
Q  257 ctaaagtgaaagtagaaaat 276  Q
    ||||||||||| ||||||||    
T  36827409 ctaaagtgaaaatagaaaat 36827390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 36279025 - 36279100
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgaca 216  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||||||| | || | ||||||||||||| ||||    
T  36279025 taagtctctgactctgcacttccgttatcattttagtccctgacgttaaaaaattcttttaagtgatgatgtgaca 36279100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 47118100 - 47118037
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||||||||| || |||||||||    
T  47118100 aagtctctgactctgcactttcgttatcactttagtccctgacgttaaataattttgttaagtg 47118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 36280367 - 36280297
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| ||||||||||||| |||||||| ||||||| ||||||||||| |  |||||||||||||||||    
T  36280367 taagtctctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatatgttaagtgatgatg 36280297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 53959143 - 53959080
Alignment:
Q  148 atgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    |||||||||||||| |||||||| ||||||||||||||||||| |  | |||||||||||||||    
T  53959143 atgactctgcacttccgttatcactttagtctctgacgttaaaaaaatttgttaagtgatgatg 53959080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 33427832 - 33427888
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    |||||||||||||||||||||| |||||| ||| || ||||||| ||||||||||||    
T  33427832 tgactctgcactttcgttatcactttagtatctaacattaaataattatgttaagtg 33427888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 47075393 - 47075337
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||| || |||||||||    
T  47075393 tgactctacacttccgttatcactttagtctctgacgttaaataattttgttaagtg 47075337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 48808520 - 48808570
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||| ||||    
T  48808520 gcatatgaggtgtcacagagaccaaagtgaaagtagaaaatggtcactttg 48808570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 47428605 - 47428549
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    ||||||||||||| |||||||| || ||||| | |||||||||| ||||||||||||    
T  47428605 tgactctgcacttccgttatcacttcagtctataacgttaaataattatgttaagtg 47428549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 48573133 - 48573185
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||| ||||||    
T  48573133 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttgat 48573185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 17700667 - 17700717
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  17700667 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttg 17700717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 52317052 - 52317122
Alignment:
Q  141 taagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||| | ||||||||| | ||||||||||||||||  |||||||||| |  | |||||||||||||||    
T  52317052 taagtctttaactctgcacctccgttatcattttagtccatgacgttaaaaaaatctgttaagtgatgatg 52317122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 55388154 - 55388216
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatg 211  Q
    ||||||||||||  |||||||| ||||||| ||||||||||| |  | |||||||||||||||    
T  55388154 tgactctgcactcccgttatcactttagtccctgacgttaaaaaaatttgttaagtgatgatg 55388216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 3694132 - 3694043
Alignment:
Q  199 ttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    ||||||||||||| | || | |||||| | ||||||||  | ||| |||| || |||||||||||||||||| ||||| |||| ||||||    
T  3694132 ttaagtgatgatgtgtcacatgttttatgctgacaaggagtatgatgtgtaacggagactaaagtgaaagtacaaaatggtcactttgat 3694043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 17700599 - 17700640
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaa 190  Q
    ||||||||||||| |||||||| ||||||| |||||||||||    
T  17700599 tgactctgcacttccgttatcactttagtccctgacgttaaa 17700640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 17701961 - 17701920
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaa 190  Q
    ||||||||||||| |||||||| ||||||| |||||||||||    
T  17701961 tgactctgcacttccgttatcactttagtccctgacgttaaa 17701920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 36279105 - 36279150
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  36279105 tgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttg 36279150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 48574434 - 48574389
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtca 281  Q
    |||| ||||||||||||| ||| |||||||||||||||||| ||||    
T  48574434 gcatatgaggtgtcacagggaccaaagtgaaagtagaaaatggtca 48574389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 48574501 - 48574460
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaa 190  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  48574501 tgactctgcactttcgttatcactttagtccttgacgttaaa 48574460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 55389439 - 55389394
Alignment:
Q  241 tgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttg 286  Q
    ||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  55389439 tgaggtgtcacagggaccaaagtgaaagtagaaaatggtcactttg 55389394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 45600981 - 45600925
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtg 205  Q
    ||||||||||||| |||||||| |||||||   ||||||||||| || |||||||||    
T  45600981 tgactctgcacttccgttatcactttagtccacgacgttaaataattctgttaagtg 45600925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 48809630 - 48809578
Alignment:
Q  236 gcatgtgaggtgtcacagagactaaagtgaaagtagaaaatagtcattttgat 288  Q
    |||| |||||||||| |  |||||||||||||||||||||| |||| ||||||    
T  48809630 gcatatgaggtgtcagaaggactaaagtgaaagtagaaaatggtcactttgat 48809578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 79154 - 79281
Alignment:
Q  149 tgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgt 248  Q
    ||||| ||||| | || ||||| |||||||| |||||||||||| || ||||||||||||||| |||| | |||||||||||||| | ||| |||||| |    
T  79154 tgactttgcacctccgatatcactttagtctttgacgttaaataattttgttaagtgatgatgtgacacatgttttacgatgacatgacatatgaggtct 79253  T
Q  249 cacagagactaaagtgaaagtagaaaat 276  Q
    ||||| ||||||| |||||| |||||||    
T  79254 cacagggactaaaatgaaagaagaaaat 79281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 79732 - 79658
Alignment:
Q  142 aagtctatgactctgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgaca 216  Q
    |||||| |||||||||| ||   ||||||||||||||| |||||||||||| || | ||||||||||||| ||||    
T  79732 aagtctttgactctgcatttctattatcattttagtctttgacgttaaataattttattaagtgatgatgtgaca 79658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 142329 - 142458
Alignment:
Q  155 tgcactttcgttatcattttagtctctgacgttaaatagttatgttaagtgatgatgcgacataagttttacgatgacaaggcatgtgaggtgtcacaga 254  Q
    |||||||  |||||||||||||| |||||| ||| ||| || |||||| ||| || | | || | |||||| ||| | ||||  | |||||||||||| |    
T  142329 tgcacttctgttatcattttagtatctgacattatataattttgttaattgaagacgtggcaaatgttttatgattataaggagtatgaggtgtcacaaa 142428  T
Q  255 gactaaagtgaaagtagaaaatagtcatttt 285  Q
    ||||||| ||||| |||||||| ||||||||    
T  142429 gactaaaatgaaa-tagaaaattgtcatttt 142458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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