View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18734_low_13 (Length: 288)
Name: NF18734_low_13
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_low_13 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 35082693 - 35082962
Alignment:
| Q |
1 |
aggcatgttttcttcggcgaatattctgagtttgttgagctcaggaagcacaatttttccaagatcaggtctatcttttctcctcatttcagcacactga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35082693 |
aggcatgttttcttcggcgaatattctgagtttgttgagctcaggaagcacaatttttccaagatcaggtctatcttttctcctcatttcagcacactga |
35082792 |
T |
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| Q |
101 |
aggcaaagtttggcgaaatgcaaggtgtgttccataggccagtcttgaacagcaggatcaagcatgtcatgaaaagttcccttttcaatagatctaccaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35082793 |
aggcaaagtttggcgaaatgcaaggtgtgttccataggccagtcttgaacagcaggatcaagcatgtcaagaaaagttcccttttcaatagatctaccaa |
35082892 |
T |
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| Q |
201 |
catgatgagtcaaacccattggaggtttggcggtaatcacttgtaaaagcatgattccaagtgagtaaat |
270 |
Q |
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| T |
35082893 |
catgatgagtcaaacccattggaggtttggcggtaatcacttgtaaaagcatgattccaagtgagtaaat |
35082962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 42523186 - 42522941
Alignment:
| Q |
25 |
tctgagtttgttgagctcaggaagcacaatttttccaagatcaggtctatcttttctcctcatttcagcacactgaaggcaaagtttggcgaaatgcaag |
124 |
Q |
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| T |
42523186 |
tctgagtttgttgagctcaggcaaaataactttgccaagatcaggtctgtcttttcttctcatttctgcacactgaatagcaagcttggcaaaatgcata |
42523087 |
T |
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| Q |
125 |
gtgtgttccataggccagtcttgaacagcaggatcaagcatgtcatgaaaagttcccttttcaatagatctaccaacatgatgagtcaaacccattggag |
224 |
Q |
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| T |
42523086 |
gcctgttcaattggccaatcctcaacggcaggatcaagcatctcatcaaaagtacctttctcaatagatcttgcaacatggtgactcaaacccattggtg |
42522987 |
T |
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| Q |
225 |
gtttggcggtaatcacttgtaaaagcatgattccaagtgagtaaat |
270 |
Q |
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| || || || |||| ||||| ||||||||| |||||||||||||| |
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| T |
42522986 |
gcttcgctgttatcatttgtagaagcatgatcccaagtgagtaaat |
42522941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 42531394 - 42531149
Alignment:
| Q |
25 |
tctgagtttgttgagctcaggaagcacaatttttccaagatcaggtctatcttttctcctcatttcagcacactgaaggcaaagtttggcgaaatgcaag |
124 |
Q |
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| T |
42531394 |
tctgagtttgttgagctcaggcaaaataactttgccaagatcaggtctgtcttttcttctcatttctgcacactgaatagcaagcttggcaaaatgcata |
42531295 |
T |
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| Q |
125 |
gtgtgttccataggccagtcttgaacagcaggatcaagcatgtcatgaaaagttcccttttcaatagatctaccaacatgatgagtcaaacccattggag |
224 |
Q |
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| T |
42531294 |
gcctgttcaattggccaatcctcaacggcaggatcaagcatctcatcaaaagtacctttctcaatagatcttgcaacatggtgactcaaacccattggtg |
42531195 |
T |
|
| Q |
225 |
gtttggcggtaatcacttgtaaaagcatgattccaagtgagtaaat |
270 |
Q |
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| T |
42531194 |
gcctcgctgttatcatttgtagaagcatgatcccaagtgagtaaat |
42531149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 290 - 244
Alignment:
| Q |
176 |
gttcccttttcaatagatctaccaacatgatgagtcaaacccattgg |
222 |
Q |
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| T |
290 |
gttcccttctcaatagctctaccaacatgatgtgtcaatcccattgg |
244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 1274282 - 1274236
Alignment:
| Q |
176 |
gttcccttttcaatagatctaccaacatgatgagtcaaacccattgg |
222 |
Q |
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|||||||| ||||||| ||||||||||||||| ||||| |||||||| |
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| T |
1274282 |
gttcccttctcaatagctctaccaacatgatgtgtcaatcccattgg |
1274236 |
T |
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