View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18734_low_14 (Length: 286)
Name: NF18734_low_14
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18734_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 33116212 - 33115959
Alignment:
| Q |
21 |
tgccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33116212 |
tgccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttcctttcatggtc |
33116113 |
T |
|
| Q |
121 |
caatggtgatatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgcca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116112 |
caatggtgatatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgcca |
33116013 |
T |
|
| Q |
221 |
ctgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116012 |
ctgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctc |
33115959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 30619944 - 30620049
Alignment:
| Q |
146 |
caaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaaccaggaacagt |
245 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||| || || || || || ||||||||||||||||||| ||| ||||||||||||||||||||||| || |
|
|
| T |
30619944 |
caaacataaaaactgtcataaagaaaaatcccattaactgaatagtgaaccttccaattctatcaatgaatgcaactgtgaaccagtaaccaggaactgt |
30620043 |
T |
|
| Q |
246 |
actgca |
251 |
Q |
| |
|
|||||| |
|
|
| T |
30620044 |
actgca |
30620049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 16185071 - 16184911
Alignment:
| Q |
21 |
tgccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtc |
120 |
Q |
| |
|
|||||| || ||||| ||||| |||||||||||||||||||||||||||||||| | ||| ||||| |||||||| |||||| || | | | || || |
|
|
| T |
16185071 |
tgccggtacaacaaatgtcgtagcatttggaccaaaattagcaaagaagaatgtgagtgagtacattacaacaaacccaattctattctcttccttgctc |
16184972 |
T |
|
| Q |
121 |
caatggtgatatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatca |
181 |
Q |
| |
|
||||| | |||||| ||||| | | ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
16184971 |
caatgatcatatggtatggcaagtgcaaacatgaaaacagtcatgaagaagaatcccatca |
16184911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 30615190 - 30615292
Alignment:
| Q |
146 |
caaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaaccaggaacagt |
245 |
Q |
| |
|
||||||| ||||| ||||| ||||| |||||||| || || || || || ||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30615190 |
caaacataaaaactgtcataaagaagaatcccattaactgaatagtgaaccttcccattctatcaatgagtgccactgtgaaccagtaaccaggaactgt |
30615289 |
T |
|
| Q |
246 |
act |
248 |
Q |
| |
|
||| |
|
|
| T |
30615290 |
act |
30615292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 16224461 - 16224301
Alignment:
| Q |
21 |
tgccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtc |
120 |
Q |
| |
|
|||||| || ||||| ||||| |||||||||||||||||||||||||||||||| | ||| || || |||||||| |||||| || | | | || || |
|
|
| T |
16224461 |
tgccggtacaacaaatgtcgtagcatttggaccaaaattagcaaagaagaatgtgagtgagtatattacaacaaacccaattctattctcttccttgctc |
16224362 |
T |
|
| Q |
121 |
caatggtgatatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatca |
181 |
Q |
| |
|
||||| | |||||| ||||| | | ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
16224361 |
caatgatcatatggtatggcaagtgcaaacatgaaaacagtcatgaagaagaatcccatca |
16224301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 16174291 - 16174451
Alignment:
| Q |
21 |
tgccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtc |
120 |
Q |
| |
|
|||||| || ||||| || || |||||||||||||||||||||||||||||||| | ||| ||||| |||||||| |||||| || | | | || || |
|
|
| T |
16174291 |
tgccggtacaacaaatgttgtagcatttggaccaaaattagcaaagaagaatgttagtgagtacattacaacaaacccaattctattctcttccttgctc |
16174390 |
T |
|
| Q |
121 |
caatggtgatatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatca |
181 |
Q |
| |
|
||||| | |||||| ||||| | ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
16174391 |
caatgatcatatggtatggcaagagcaaacatgaaaacagtcatgaagaagaatcccatca |
16174451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 33110167 - 33109918
Alignment:
| Q |
25 |
ggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatggtccaat |
124 |
Q |
| |
|
||||| ||||| || || ||||||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| |||||| |||| | ||| | ||||||| |
|
|
| T |
33110167 |
ggaacaacaaatgtggtagcatttggaccgaaattggcaaaaaagaaagttaatgagtacattacaacaaacccaattctgttttctttcttagtccaat |
33110068 |
T |
|
| Q |
125 |
ggtgatatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgt |
224 |
Q |
| |
|
| | ||| || || || | |||||||||| |||||||||||||| || |||||||||||||| | ||| | || || ||| || | ||||||||| |
|
|
| T |
33110067 |
gatcataaggtatagctagagcaaacatgaagacggtcatgaagaagaaacccatcaattggatcgcaaaacgacccatgtaatcgataaatgccactgt |
33109968 |
T |
|
| Q |
225 |
gaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctc |
274 |
Q |
| |
|
||||||||||| || || |||||||| | |||||| || || ||||||| |
|
|
| T |
33109967 |
aaaccagtaacctggcactgtactgcacaatgctataagggtttgtgctc |
33109918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 38894145 - 38894023
Alignment:
| Q |
129 |
atatggaatggccaatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaac |
228 |
Q |
| |
|
|||||||||||| | |||||||||| || ||||| ||||| |||||||||||||||||| |||| ||||| || || |||||||| ||||| || ||| |
|
|
| T |
38894145 |
atatggaatggcaagagcaaacatgaagacagtcataaagaagaatcccatcaattggattttaaaccttcctatcctgtcaatgagagccaccgtaaac |
38894046 |
T |
|
| Q |
229 |
cagtaaccaggaacagtactgca |
251 |
Q |
| |
|
||||| || ||||| |||||||| |
|
|
| T |
38894045 |
cagtagcctggaactgtactgca |
38894023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 251
Target Start/End: Complemental strand, 38885045 - 38884837
Alignment:
| Q |
43 |
gcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttccattcatg-gtccaatggtgatatggaatggcc |
141 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||| ||||| || || ||||| || ||| ||||| | || ||| ||||| || | ||| |||||||| |
|
|
| T |
38885045 |
gcattaggcccaaaatttgcaaagaagaaggtcaaggaatatatcaccacaaatcctattcggttttcctt-atgagtccagtgttcataaggaatggca |
38884947 |
T |
|
| Q |
142 |
aatccaaacatgaaaacggtcatgaagaaaaatcccatcaattggattgtaaatcttccaattctatcaatgagtgccactgtgaaccagtaaccaggaa |
241 |
Q |
| |
|
| |||||||||| | ||||| ||||| ||||||||||||||||| ||||||||||| ||||| || |||| ||||| || ||||| ||||| |||| |
|
|
| T |
38884946 |
agagcaaacatgaaggcagtcataaagaagaatcccatcaattggatggtaaatcttcctattctgtctatgaaagccacggtaaaccaataacctggaa |
38884847 |
T |
|
| Q |
242 |
cagtactgca |
251 |
Q |
| |
|
| |||||||| |
|
|
| T |
38884846 |
ctgtactgca |
38884837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University