View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18734_low_16 (Length: 233)

Name: NF18734_low_16
Description: NF18734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18734_low_16
NF18734_low_16
[»] chr6 (25 HSPs)
chr6 (14-218)||(29949900-29950104)
chr6 (20-185)||(29953703-29953868)
chr6 (20-218)||(30149319-30149517)
chr6 (20-216)||(30053221-30053417)
chr6 (23-209)||(30154301-30154487)
chr6 (20-172)||(24897915-24898067)
chr6 (20-209)||(24934468-24934657)
chr6 (20-209)||(24739204-24739393)
chr6 (20-198)||(24942012-24942190)
chr6 (20-209)||(21160634-21160823)
chr6 (20-185)||(30577777-30577942)
chr6 (20-151)||(30134984-30135115)
chr6 (32-207)||(29348619-29348794)
chr6 (107-208)||(29882237-29882338)
chr6 (107-208)||(29909393-29909494)
chr6 (106-214)||(29887093-29887201)
chr6 (36-184)||(30028964-30029112)
chr6 (106-184)||(16702241-16702319)
chr6 (107-184)||(29929099-29929176)
chr6 (108-184)||(15715083-15715159)
chr6 (92-152)||(30132573-30132633)
chr6 (106-185)||(29946262-29946341)
chr6 (24-78)||(16517626-16517680)
chr6 (106-184)||(29876651-29876729)
chr6 (132-184)||(24884966-24885017)
[»] chr3 (1 HSPs)
chr3 (20-216)||(24226614-24226810)
[»] scaffold0110 (1 HSPs)
scaffold0110 (20-172)||(43878-44030)
[»] chr4 (1 HSPs)
chr4 (20-172)||(44262602-44262754)
[»] chr7 (1 HSPs)
chr7 (24-94)||(13093546-13093616)
[»] scaffold0237 (1 HSPs)
scaffold0237 (107-184)||(22169-22246)
[»] scaffold0054 (1 HSPs)
scaffold0054 (107-208)||(53692-53793)
[»] chr5 (1 HSPs)
chr5 (133-209)||(20888536-20888612)
[»] scaffold0014 (1 HSPs)
scaffold0014 (33-184)||(137200-137351)
[»] scaffold0652 (1 HSPs)
scaffold0652 (106-192)||(1381-1467)
[»] scaffold0086 (1 HSPs)
scaffold0086 (106-184)||(31400-31478)
[»] chr1 (3 HSPs)
chr1 (108-181)||(10129966-10130039)
chr1 (93-176)||(19490084-19490167)
chr1 (132-184)||(41316095-41316147)
[»] chr8 (1 HSPs)
chr8 (108-184)||(13904694-13904770)
[»] scaffold0051 (1 HSPs)
scaffold0051 (132-184)||(43406-43458)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 29949900 - 29950104
Alignment:
Q  14 aagaatatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  29949900 aagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatctggagtcatattactggaatgcatt 29949999  T
Q  114 tctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccccttagag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29950000 tctttgaagagattcgcagcttcattcaccattttattcttacataatccgttaatcatgatattgtagctaaaaacattaggagtcactccccttagag 29950099  T
Q  214 aaagg 218  Q
     ||||    
T  29950100 gaagg 29950104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 29953703 - 29953868
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||| ||||||    
T  29953703 atcccaaacatcagagatgctccctgatttgcaaagtccatcaataagagaattgtatgatattgtatcaggagtcatatttctggaatgcatatctttg 29953802  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagcta 185  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  29953803 aagagattcgcagcttcattcaccattttattcttacataatccgttaatcatgacattgtagcta 29953868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 30149517 - 30149319
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||||| |||||||||| |||||| || ||| |||||| | | |||||||||||||||    
T  30149517 atcccaaacatcagatactctccctaatttgcaaagtccatcaataagggaattgtatgttacagtgttaggaatcatatctttcgaatgcatttctttg 30149418  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccccttagagaaagg 218  Q
    || |||||  | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30149417 aaaagatttacggcttcatccaccattttattcttacataatccgttaatcatgatattgtagctaaaaacattaggagtcactccccttagagaaagg 30149319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 30053417 - 30053221
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||  |||||||| |||||||| ||| |  ||||||||||||||    
T  30053417 atcccaaacatcagagattcttcccgatttgcaaagtccatcaataagtgaactgtatgtaacagtattaggagtcatgttttttaaatgcatttctttg 30053318  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccccttagagaaa 216  Q
    || || ||| ||||||||| ||||||||||||||||| |||||| |||||||||| | ||||||||  ||||||||||||| |||||||||||||||    
T  30053317 aaaagtttcacagcttcatccaccattttattcttacataatccattaatcatgacaatgtagctatgaacattaggagtcactccccttagagaaa 30053221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 30154487 - 30154301
Alignment:
Q  23 ccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaag 122  Q
    ||||||||||||||||||||| ||||||||||| || |||||||| |||||||||| || |||||| ||||||| | || |||||||||||||||| |||    
T  30154487 ccaaacatcagagattctccccgatttgcaaagcccgtcaataagggaattgtatgttatagtattaggagtcaaacttttggaatgcatttctttaaag 30154388  T
Q  123 agattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 209  Q
    ||| || ||||||||| ||||||||||  ||||| |||||| |||||||||| | ||||||||  ||||||||||||| ||||||||    
T  30154387 agaatcacagcttcatccaccattttaaccttacataatccattaatcatgacactgtagctacgaacattaggagtcactcccctt 30154301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 24898067 - 24897915
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||| ||| |||||| |||| |||  |||| ||| ||| |  |||||| |||||||    
T  24898067 atcccaaacatcagatattttccccgatttgcaaagtccatcaataagtgaactgtatgctacaatatcaggagccatgttttttaaatgcaattctttg 24897968  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcat 172  Q
    ||||||||  ||||||||| ||||||||||||||||| |||||||||||||||    
T  24897967 aagagattgacagcttcatccaccattttattcttacataatccgttaatcat 24897915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 24934657 - 24934468
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||| ||||||||||||||||  |||||  ||| ||||| ||||| |||||||||| ||||||||| |||| |||| || |||||||||||||||||    
T  24934657 atcccaagcatcagagattctcccatatttgagaagaccatcgataagtgaattgtatgttacagtattaggagccatacttttggaatgcatttctttg 24934558  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 209  Q
    ||||||||  | ||||||| |||||||||| |||| | || ||| |||||||| ||| |||||||   ||||| ||||||| ||||||||    
T  24934557 aagagattaacggcttcatccaccattttagtcttgcatagtccattaatcataatactgtagctttgaacatcaggagtcactcccctt 24934468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 24739204 - 24739393
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||| ||||| |||||||||| ||||||  ||| ||||| ||||| ||| |||||| ||||||||| |||| |||| || |||||||||||||||||    
T  24739204 atcccaagcatcaaagattctcccagatttgtgaagaccatcgataagtgaactgtatgttacagtattaggagccatacttttggaatgcatttctttg 24739303  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 209  Q
    | ||||||  | ||||||| |||||||||| |||||| || ||| |||||||||| | | ||||||  ||||| ||||||| ||||||||    
T  24739304 aggagattaacggcttcatccaccattttagtcttacatagtccattaatcatgacactatagctatgaacatcaggagtcactcccctt 24739393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 24942190 - 24942012
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| ||| |||||  || | |||  |||| ||| |||||   ||||| |||||||    
T  24942190 atcccaaacatcagagattcttcccgatttgcaaagtccatcaataagcgaactgtatactataatatcaggagccatgtttcttatatgcaattctttg 24942091  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggag 198  Q
    ||||||||  | ||||||| ||||||||||||||||| ||||||  | ||||||| | ||||||||  || ||||||||    
T  24942090 aagagattgacggcttcatccaccattttattcttacataatccagttatcatgacactgtagctatgaagattaggag 24942012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 21160634 - 21160823
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||| ||||||||||||||||  |||||  ||| ||||| ||||| |||||||||| |||| |||  |||| ||| ||| |  |||||||||||||     
T  21160634 atcccaagcatcagagattctcccatatttgagaagaccatcgataagtgaattgtatgttacaatatcaggagccatgttttttaaatgcatttcttta 21160733  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 209  Q
    ||||||||  | ||||||| ||||||||||||||||| || ||| |||||||||| | | ||||||  |||||||| |||| ||||||||    
T  21160734 aagagattaacggcttcatccaccattttattcttacatagtccattaatcatgacagtatagctatgaacattagaagtcactcccctt 21160823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 30577777 - 30577942
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||||||| ||||||||| ||  |||||| |||||| |||||||| | | |||||| || |||||  ||||||||| || || | |||||||||||     
T  30577777 atcccaaacataagagattcttcccaatttgccaagtccgtcaataagggtactgtatgttatagtatcaggagtcatacttttgaattgcatttcttta 30577876  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagcta 185  Q
    |||||| || ||||||||| ||||||||||  ||||| |||||| |||||||| ||||||||||||    
T  30577877 aagagaatcacagcttcatccaccattttagccttacttaatccattaatcattatattgtagcta 30577942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 30135115 - 30134984
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||| |  |  || |  ||||||||  || ||||||||||||| ||     
T  30135115 atcccaaacatcagaggttctccccgatatgcaaagtccatcaataagcgaagtgtacgtgaatgtgtcaggagtcattcttttggaatgcatttcgttt 30135016  T
Q  120 aagagattcgcagcttcattcaccattttatt 151  Q
    ||||||||| | |||||||  |||||||||||    
T  30135015 aagagattcacggcttcatcaaccattttatt 30134984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 29348619 - 29348794
Alignment:
Q  32 agagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgca 131  Q
    ||||||| |||||||||| || |  ||||||||||| |||||||| | |||   ||  ||| | || ||| || ||||||||||||| |||||||||       
T  29348619 agagattttccctgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatgtttttgcaatgcatttctttaaagagattcatg 29348718  T
Q  132 gcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccc 207  Q
    |||||||  ||| ||||| ||||||  || |||||||||||||||||||||||   |||||||| |||| ||||||    
T  29348719 gcttcatcaacctttttaatcttacaaaacccgttaatcatgatattgtagctctgaacattagcagtcactcccc 29348794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 29882338 - 29882237
Alignment:
Q  107 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccc 206  Q
    ||||||||||||||| || |||   ||||||| |||||||||| ||||||  ||||| |||||||||||| |||||||   |||||||| |||| |||||    
T  29882338 atgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactccc 29882239  T
Q  207 ct 208  Q
    ||    
T  29882238 ct 29882237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 29909494 - 29909393
Alignment:
Q  107 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccc 206  Q
    ||||||||||||||| || |||   ||||||| |||||||||| ||||||  ||||| |||||||||||| |||||||   |||||||| |||| |||||    
T  29909494 atgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactccc 29909395  T
Q  207 ct 208  Q
    ||    
T  29909394 ct 29909393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 29887201 - 29887093
Alignment:
Q  106 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcc 205  Q
    ||||||||||||  |||||||||   |||||||    ||||||| ||||||  ||||| ||||||||||||||||||||  ||||||||| |||| ||||    
T  29887201 aatgcatttcttcaaagagattcatggcttcatcggtcattttaatcttacaaaatccattaatcatgatattgtagctccaaacattagcagtcactcc 29887102  T
Q  206 ccttagaga 214  Q
    ||| |||||    
T  29887101 cctaagaga 29887093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 30029112 - 30028964
Alignment:
Q  36 attctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagctt 135  Q
    ||||| || ||||| |||||||||| ||||||||||||||| |  || ||||| |||  ||||||||   |||||||||  || || |||||| ||||||    
T  30029112 attcttccggatttacaaagtccataaataagagaattgtacgtcaccgtattaggaaccatatttcgtaaatgcattttcttaaaaagattcacagctt 30029013  T
Q  136 cattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    ||| |||||||||| | ||||  ||||| | |||||| ||||| |||||    
T  30029012 catccaccattttactattacacaatccatcaatcataatattatagct 30028964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 16702241 - 16702319
Alignment:
Q  106 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    ||||||||||| |||||||||||   |||||||  ||||||||| |||||| |||||| ||||| | ||||||||||||    
T  16702241 aatgcatttctgtgaagagattcaaggcttcatcaaccattttaatcttacataatccattaataaggatattgtagct 16702319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 29929176 - 29929099
Alignment:
Q  107 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    ||||||||||||||| || |||   ||||||| |||||||||| ||||||  ||||| |||||||||||| |||||||    
T  29929176 atgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatactgtagct 29929099  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 15715083 - 15715159
Alignment:
Q  108 tgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    |||||||||||||||||||||   |||||||  ||||||||| |||||| ||| || ||||| |||||| |||||||    
T  15715083 tgcatttctttgaagagattcaaggcttcatcaaccattttaatcttacataagccattaataatgatagtgtagct 15715159  T

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Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 30132633 - 30132573
Alignment:
Q  92 agtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccattttattc 152  Q
    ||||||| || |||||||||||||||| |||||| ||  |||||||| |||||||||||||    
T  30132633 agtcatacttttggaatgcatttctttaaagagaatcagagcttcatccaccattttattc 30132573  T

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Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 29946341 - 29946262
Alignment:
Q  106 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagcta 185  Q
    ||||||||||||  |||||||||   ||||||| |||||||||| ||||||  ||||| |||||||||||| | ||||||    
T  29946341 aatgcatttcttcaaagagattcatggcttcatccaccattttaatcttacaaaatccattaatcatgataatatagcta 29946262  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 16517680 - 16517626
Alignment:
Q  24 caaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatg 78  Q
    ||||||||||||| |||||||  ||||||||||  ||||||||| ||||||||||    
T  16517680 caaacatcagagaatctccctcgtttgcaaagtaaatcaataagtgaattgtatg 16517626  T

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Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 29876729 - 29876651
Alignment:
Q  106 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    |||||||||||| ||||||||||   ||||||| || |||||||  |||||  ||||| |||||||||||| |||||||    
T  29876729 aatgcatttcttggaagagattcattgcttcatccatcattttaaccttacaaaatccattaatcatgatactgtagct 29876651  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 24885017 - 24884966
Alignment:
Q  132 gcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    ||||||| ||||||||||||||||| |||| |||||||  |||||||||||||    
T  24885017 gcttcatccaccattttattcttacataattcgttaat-gtgatattgtagct 24884966  T

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Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 24226810 - 24226614
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||| || |||||||||| |||||| |  |||  ||||||| |||||||||||||||||    
T  24226810 atcccaaacatcatatattctccttgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatatttttggaatgcatttctttg 24226711  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccccttagagaaa 216  Q
    || ||||| || ||||||| ||||||||||||||||| |||||| ||||||||||  |||||||||  |||||||||||||  ||||||||||||||    
T  24226710 aaaagatttgcggcttcatccaccattttattcttacataatccattaatcatgactttgtagctacgaacattaggagtcattccccttagagaaa 24226614  T

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Target: scaffold0110 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 43878 - 44030
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||| |  |||||||||| |||||| || |||  ||||||| |||||||||||||||||    
T  43878 atcccaagcatcagacattctccctaatttgcaaagtccatcaattaaggaattgtatgttacagtgttaggaaccatatttttggaatgcatttctttg 43977  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcat 172  Q
    ||||||||  | ||||||| ||||||||||||||| |  ||||||||||||||    
T  43978 aagagattaactgcttcatccaccattttattcttgcaaaatccgttaatcat 44030  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 44262602 - 44262754
Alignment:
Q  20 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 119  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| || |||||  |||| ||| ||| |    |||| |||||||    
T  44262602 atcccaaacatcagatattcttcctgatttgcaaagtccatcaataagtgaattgtatgttatagtatcgggagccatgttttttatttgcagttctttg 44262701  T
Q  120 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcat 172  Q
    ||||||||  | ||||||| ||||||||| |||||||  ||||| ||||||||    
T  44262702 aagagattgacggcttcatccaccatttttttcttacacaatccattaatcat 44262754  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 13093546 - 13093616
Alignment:
Q  24 caaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagt 94  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||| |||| |||| |||||    
T  13093546 caaacatcatagaatctctctgatttgcaaagtccatcaataagtgaattgtatgttacaatattaggagt 13093616  T

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Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 22246 - 22169
Alignment:
Q  107 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    ||||||||||||||| || |||   ||||||| |||||||||| ||||||  ||||| ||||||||||||||||||||    
T  22246 atgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatattgtagct 22169  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 53692 - 53793
Alignment:
Q  107 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccc 206  Q
    |||||||||| ||||||| |||   |||| || |||| ||||| ||||||  ||||| |||||||||||||||||||||  |||||||| |||| |||||    
T  53692 atgcatttctatgaagagtttcatggctttatccacctttttaatcttacaaaatccattaatcatgatattgtagctatgaacattagcagtcactccc 53791  T
Q  207 ct 208  Q
    ||    
T  53792 ct 53793  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 20888612 - 20888536
Alignment:
Q  133 cttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 209  Q
    |||||| ||||||||||||||||  |||| |||||||||||| ||||||||||  |||||||  |||| ||||||||    
T  20888612 cttcatccaccattttattcttatataatacgttaatcatgacattgtagctatcaacattataagtcactcccctt 20888536  T

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Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 137351 - 137200
Alignment:
Q  33 gagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcag 132  Q
    |||||||| ||||||||||| |  |||||||| ||||||||||| | ||| ||||| ||||  ||  ||    || ||||||| || |||||| ||  ||    
T  137351 gagattctacctgatttgcacaaaccatcaatgagagaattgtaagttaccgtattgggagaaattctttgacaacgcatttcattaaagagactcaaag 137252  T
Q  133 cttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    ||||||| ||||||||| ||||||  ||||| |||||||||||||| |||||    
T  137251 cttcattgaccattttaatcttacagaatccattaatcatgatattatagct 137200  T

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Target: scaffold0652 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 1381 - 1467
Alignment:
Q  106 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacat 192  Q
    ||||||||||| |||||||||||   |||||||  ||||||||| |||||| ||| || ||||| |||||| ||||||| |||||||    
T  1381 aatgcatttctgtgaagagattcaaggcttcatcaaccattttaatcttacataaaccattaataatgataatgtagctgaaaacat 1467  T

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Target: scaffold0086 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 31400 - 31478
Alignment:
Q  106 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    ||||||||||| |||||||||||   |||||||  || |||||| |||||| |||||| ||||| ||||||||||||||    
T  31400 aatgcatttctgtgaagagattcaaggcttcatcaacaattttaatcttacataatccattaataatgatattgtagct 31478  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 10130039 - 10129966
Alignment:
Q  108 tgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgta 181  Q
    |||||||||||||||||||    |||||||| |||||||||| ||||||  ||||| |||||||||||| ||||    
T  10130039 tgcatttctttgaagagatcaatagcttcatccaccattttaatcttacaaaatccattaatcatgatactgta 10129966  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 19490167 - 19490084
Alignment:
Q  93 gtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgata 176  Q
    ||||||||| |||||||||||||||  |||||| |  | ||||||| || ||||||  |||||| |||||| ||||||||||||    
T  19490167 gtcatatttgtggaatgcatttcttcaaagagacttaccgcttcatccaacattttcatcttacataatccattaatcatgata 19490084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 41316147 - 41316095
Alignment:
Q  132 gcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    |||||||| || |||||| ||||||  |||||||||||||||||||| |||||    
T  41316147 gcttcattgactattttaatcttacagaatccgttaatcatgatattatagct 41316095  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 13904694 - 13904770
Alignment:
Q  108 tgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    |||||||||||||||||||||   |||||||  ||||||||| |||||| ||| || ||||| |||||| |||||||    
T  13904694 tgcatttctttgaagagattcaaggcttcatcaaccattttaatcttacataagccattaataatgatagtgtagct 13904770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 43406 - 43458
Alignment:
Q  132 gcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 184  Q
    |||||||| ||||||||| ||||||  ||||| |||||||||||||| |||||    
T  43406 gcttcattgaccattttaatcttacaaaatccattaatcatgatattatagct 43458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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