View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18735_high_1 (Length: 772)
Name: NF18735_high_1
Description: NF18735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18735_high_1 |
 | |
|
| [»] scaffold0181 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 755
Target Start/End: Complemental strand, 38983701 - 38982940
Alignment:
| Q |
1 |
ttggagctggaagaagatggagtaatatctcaccttggaaatgacgacacatgcaagttgagcttcatgtagaagtgtcggcgtctagcacaacgttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
38983701 |
ttggagctggaagaagatggagtaatatctcaccttggaaatgacgacacatgcaagttgagcttcatgtagaagtgtgggcgtctagaacaacgttaaa |
38983602 |
T |
|
| Q |
101 |
cacttaacatcagtctaaagggtcattgctaagaataatccagaccagtctcgagagacgatgacaaaaatacttgattactccttaagaggacaaccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38983601 |
cacttaacatcagtctaaagggtcattgctaagaataatctagaccagtctcgagagacgatgacaaaaatacttgattactccttaagaggacaaccta |
38983502 |
T |
|
| Q |
201 |
atgag--------gttccaagataaaagatgtaatgaatatacgcatttagaagttaaggtagaagaaactctactttaagcgtgaatcctannnnnnnn |
292 |
Q |
| |
|
|||| |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| | | ||| |
|
|
| T |
38983501 |
ttgagttttacaggttccaagataaaatatttaatggatatacgcatttagaagctaaggtagaagaaactcaactttaagcgtaacttctatttttcgt |
38983402 |
T |
|
| Q |
293 |
nnnnnnnnggagggaaactcttgaggtggcatttcacatggaaaaggagaaaactttcccactatagaaaagttgttttaagccattagatcaaatatat |
392 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38983401 |
ttttttttagagggaaactcttgaggtgacatttcacatggaaaatgagaaaactttcccaccatagaaaagttgttttaagccattagatcaaatatat |
38983302 |
T |
|
| Q |
393 |
aacacatccttattatagtctctcaacactagatctatttatcattctcttctgcaccgttgtctctcatccatttctttcactaacccaccacaaacat |
492 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
38983301 |
aatacatccttattatagtgtctcaacactagatctatttatcattatcttccttaccgttgtctctcatccattcctt-cactaacccaccacaaacat |
38983203 |
T |
|
| Q |
493 |
caagccattgttaaaatctcatattttcttgtttgtgtaactaacaatcgtgagtttacattctaactaagagtgtgatgccaatgagtttctccaaatt |
592 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38983202 |
caagccattgttaaaatctcatcttttcttgtttgtgtaactaacaatcgtgagtttacaatataactaagagtgtgatgccaatgagtttttccaaatt |
38983103 |
T |
|
| Q |
593 |
aatgttcagtctaaaacaatgataccaaagaatttagtctaacaccaccatattatccctttgtctctaccaacatcacgacaaccctcttacccttact |
692 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
38983102 |
aatgttcagtctaaaacaatgatgccaaagaatttagtctaacaccaccatattatccctttgtctctaccaacatcacgacaatcctcttacccttcct |
38983003 |
T |
|
| Q |
693 |
ccaacaactacatgattttctccaaattaatgttcaatttaaaacattacccctacttctcac |
755 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38983002 |
ccaacagctacatgattttctccaaattaatgttcaatttaaaacattacccctacttctcac |
38982940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 38979178 - 38979241
Alignment:
| Q |
322 |
catttcacatggaaaaggagaaaactttcccactata--gaaaagttgttttaagccattagat |
383 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38979178 |
catttcacatggaaaagtggaaaactttcccaatatatagaaaagttgttttaagccattagat |
38979241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 400 - 755
Target Start/End: Original strand, 12139446 - 12139800
Alignment:
| Q |
400 |
ccttattatagtctctcaacactagatctatttatcattctcttctgcaccgttgtctctcatccatttctttcactaacccaccacaaacatcaagcca |
499 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
12139446 |
ccttattatagtctcttaacactagatctatttatcattctcttcctcaccgttgtctctcatccattcctt-cactaacccaccacaaacatcaagcca |
12139544 |
T |
|
| Q |
500 |
ttgttaaaatctcatattttcttgtttgtgtaactaacaatcgtgagtttacattctaactaagagtgtgatgccaatgagtttctccaaattaatgttc |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12139545 |
ttgttaaaatctcatattttcttgtttgtgtaactaacaatggtgagtttacaatctaactaagagtgtgatgccaatgagtttctccaaattaatgttc |
12139644 |
T |
|
| Q |
600 |
agtctaaaacaatgataccaaagaatttagtctaacaccaccatattatccctttgtctctaccaacatcacgacaaccctcttacccttactccaacaa |
699 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
12139645 |
agtctaaaacaatgatgccaaagaatttagtctaacaccaccatattatccctttgtctctaccaacattacgacaactctcttacccttcctccaacag |
12139744 |
T |
|
| Q |
700 |
ctacatgattttctccaaattaatgttcaatttaaaacattacccctacttctcac |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12139745 |
ctacatgattttctccaaattaatgttcaatttaaaacattacccctacttctcac |
12139800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 12139196 - 12139244
Alignment:
| Q |
360 |
aaaagttgttttaagccattagatcaaatatataacacatccttattat |
408 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12139196 |
aaaagttgttttaagtcattagatcaaatatataacacatccttattat |
12139244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 12138159 - 12138195
Alignment:
| Q |
317 |
ggtggcatttcacatggaaaaggagaaaactttccca |
353 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12138159 |
ggtggcatttcacatgggaaaggagaaaactttccca |
12138195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 9123610 - 9123656
Alignment:
| Q |
313 |
ttgaggtggcatttcacatggaaaaggagaaaactttcccactatag |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
9123610 |
ttgaggtggcatttcacatggaaaaggtgaaaatcttcccaccatag |
9123656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 471 - 755
Target Start/End: Complemental strand, 46097918 - 46097633
Alignment:
| Q |
471 |
ttcactaacccaccacaaacatcaagccattgttaaaatctcatattttcttgtttgtgtaactaacaatcgtg--agtttacattctaactaagagtgt |
568 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
46097918 |
ttcactaacccaccaccaacatcaagccattgttaaaatctcatctttccttgtttgtgtaactaacaatcgtgtgagtttacaatctaactaacagtgt |
46097819 |
T |
|
| Q |
569 |
gatgccaatgagtttctccaaattaatgttcagtctaaaacaatgataccaaagaatttagtctaacaccaccatattatccctttgtctctaccaacat |
668 |
Q |
| |
|
| |||||||| || ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
46097818 |
ggcgccaatgaatt-ctccaaattaatgttcagtttaaaacaatgatgtcaataaatttagtctaacaccaccatactatccctttgtctccaccaacat |
46097720 |
T |
|
| Q |
669 |
cacgacaaccctcttacccttactccaacaactacatgattttctccaaattaatgttcaatttaaaacattacccctacttctcac |
755 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
46097719 |
cacgacaaccctcttacccttcctccaacagctacatgattttctccaaattaatgttcagtttaaaacattactcctacttctcac |
46097633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 46097399 - 46097463
Alignment:
| Q |
323 |
atttcacatggaaaaggagaaaactttcccactatagaaaagttgttttaagccattagatcaaat |
388 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||| |||| |
|
|
| T |
46097399 |
atttcacatgggaaaggggaaaactttcccaccataggaaagttg-tttaagccattagattaaat |
46097463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 35940 - 36009
Alignment:
| Q |
317 |
ggtggcatttcacatggaaaaggagaaaactttcccactatagaaaagttgttttaagccattagatcaa |
386 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||| ||||||| | ||| ||| ||| |||||||||||||| |
|
|
| T |
35940 |
ggtgacatttcacatgggaaaggacaaaacttttccactatgggaaatttgattttagccattagatcaa |
36009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 31025064 - 31025024
Alignment:
| Q |
35 |
ttggaaatgacgacacatgcaagttgagcttcatgtagaag |
75 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
31025064 |
ttggaaatgacgacacaggcaagttgaccttcatgtagaag |
31025024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 2601279 - 2601213
Alignment:
| Q |
317 |
ggtggcatttcacatggaaaaggagaaaactttcccactatagaaaagttgttttaagccattagat |
383 |
Q |
| |
|
|||| |||||||||||| ||| | |||||||||||||| |||||||| |||||| | ||||||||| |
|
|
| T |
2601279 |
ggtgacatttcacatgggaaaagtgaaaactttcccaccatagaaaaaatgtttttaaccattagat |
2601213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 727
Target Start/End: Original strand, 12201649 - 12201682
Alignment:
| Q |
694 |
caacaactacatgattttctccaaattaatgttc |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12201649 |
caacaactacatgattttctccaaattaatgttc |
12201682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 26222569 - 26222524
Alignment:
| Q |
30 |
tcaccttggaaatgacgacacatgcaagttgagcttcatgtagaag |
75 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
26222569 |
tcaccttgtaaatgacaacacatgcaagttgaccttcatgtagaag |
26222524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 6381616 - 6381567
Alignment:
| Q |
316 |
aggtggcatttcacatggaaaaggagaaaactttcccactatagaaaagt |
365 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| |||| |||| ||||| |
|
|
| T |
6381616 |
aggtggcatttcacatgggaaaggataaaacttttccaccataggaaagt |
6381567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 32584356 - 32584311
Alignment:
| Q |
30 |
tcaccttggaaatgacgacacatgcaagttgagcttcatgtagaag |
75 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
32584356 |
tcaccttggaaatgataacacttgcaagttgaccttcatgtagaag |
32584311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 727
Target Start/End: Original strand, 10670448 - 10670481
Alignment:
| Q |
694 |
caacaactacatgattttctccaaattaatgttc |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10670448 |
caacaactacatgattttctccaaattaatgttc |
10670481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 21853550 - 21853504
Alignment:
| Q |
317 |
ggtggcatttcacatggaaaaggagaaaactttcccactatagaaaa |
363 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
21853550 |
ggtggcatttaacatggaaaagggtaaaactttcccaccatagaaaa |
21853504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 15077 - 15150
Alignment:
| Q |
316 |
aggtggcatttcacatggaaaaggagaaaactttcccactatagaaaagttgttttaagccattagatcaaata |
389 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||| |||| | ||||| ||| ||||||| ||| ||||| |
|
|
| T |
15077 |
aggtggcatttaacatgggaaagggtaaaactttcccaccataggacagttgattttagccatttgattaaata |
15150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University