View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18735_high_5 (Length: 350)
Name: NF18735_high_5
Description: NF18735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18735_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 42113858 - 42113541
Alignment:
| Q |
16 |
gtaacaacgccggaacacgatgttccaatggattgaaatagacaagtaaaccttgaagaatacctaatggaagacacgtgctaaacacaaaggttacagc |
115 |
Q |
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| T |
42113858 |
gtaacaacgccggaacacgatgttccaatggattgaaatagacaagtaaaccttgaagaatacctaatggaagacacgtgctaaacacaaaggttacagc |
42113759 |
T |
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| Q |
116 |
ccaaccgtcgtttggtgtcttttttctgatggaagcgttgaggagaaacaacaacgttaagagaaaagctggttcaaagaatccaagagaaaaaacaatg |
215 |
Q |
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| T |
42113758 |
ccaaccgtcgtttggtgtcttttttctgatggaagcgttgaggagaaacaacaacgttaagagaaaagctggttcaaagaatccaagagaaaaaacaatg |
42113659 |
T |
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| Q |
216 |
tggattttgcagagattggcttgttgagtaatatctagagagggtgaaagtggatatagatattttctccggaaaaaaggtaaccggaaaagttcaatga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42113658 |
tggattttgcagagattggcttgttgagtaatatctagggagggtgaaagtggatatagatattttctccggaaaaaaggtaaccggaaaagttcaatga |
42113559 |
T |
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| Q |
316 |
tgcaccagaagaagatga |
333 |
Q |
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|||||||||||||||||| |
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| T |
42113558 |
tgcaccagaagaagatga |
42113541 |
T |
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