View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18735_high_6 (Length: 312)
Name: NF18735_high_6
Description: NF18735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18735_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 43113324 - 43113057
Alignment:
| Q |
27 |
ttacagttgaaattcataaagtatgaattaaatacttgactggtaattttggttagataaatataatttttgagcaatatgtagcaggagtatttaagat |
126 |
Q |
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| T |
43113324 |
ttacagttgaaattcataaagtatgaattaaatacttgactggtaattttggttagataaatataatttttgagcaatatgtagcaggagtatttaagat |
43113225 |
T |
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| Q |
127 |
gtgtgacaggtacagataggataagatgcaagttatcatccaacttaagtttatgtttgtcacnnnnnnnctagttttagttaactttcttaattaagaa |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43113224 |
gtgtgacaggtacagataggataagatgcaagttatcatcaaacttaagtttatgtttgtcactttttttctagttttagttaactttcttaattaagaa |
43113125 |
T |
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| Q |
227 |
ttgtccatgcatactaaaatatataacatctatggcattcaacaaaactacattaatttgtgattgct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43113124 |
ttgtccatgcatactaaaatatataacatctatggcattcaacaaaactacattaatttgtgattgct |
43113057 |
T |
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