View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18735_low_13 (Length: 217)

Name: NF18735_low_13
Description: NF18735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18735_low_13
NF18735_low_13
[»] chr5 (3 HSPs)
chr5 (19-206)||(34646292-34646476)
chr5 (19-206)||(34665986-34666170)
chr5 (46-179)||(19649096-19649229)
[»] chr4 (2 HSPs)
chr4 (20-204)||(45645489-45645673)
chr4 (144-178)||(1390499-1390533)
[»] chr8 (4 HSPs)
chr8 (46-180)||(40718020-40718154)
chr8 (121-189)||(14183338-14183406)
chr8 (128-183)||(14192295-14192350)
chr8 (134-183)||(14201301-14201350)
[»] chr6 (1 HSPs)
chr6 (123-179)||(34303063-34303119)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 34646292 - 34646476
Alignment:
Q  19 gaacaaggagtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||       |||    
T  34646292 gaacaaggagtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacg---gtgttgtgtcaactcctctaataaaaaaagac 34646388  T
Q  119 ccagttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatg 206  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34646389 cccgttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatg 34646476  T

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Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 34665986 - 34666170
Alignment:
Q  19 gaacaaggagtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||       |||    
T  34665986 gaacaaggagtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacg---gtgttgtgtcaactcctctaataaaaaaagac 34666082  T
Q  119 ccagttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatg 206  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34666083 cccgttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatg 34666170  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 19649229 - 19649096
Alignment:
Q  46 actcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngaccc---agttttctactttttgacatta 142  Q
    ||||| |||||||||||||||||||||||| |||||||   ||||||||||||||||| |  |       |||||   || |||||||| |||||| |||    
T  19649229 actcaattttggagatgccgctgtggtttctggtgacg---gtgttgtgtcaactccttttgtgaaaaaagaccctcaagctttctactatttgacgtta 19649133  T
Q  143 caagcatttagtgttggaaacaaaagagtagaatttg 179  Q
     |||||||||||||||||||||||||| |||||||||    
T  19649132 gaagcatttagtgttggaaacaaaagaatagaatttg 19649096  T

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Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 45645489 - 45645673
Alignment:
Q  20 aacaaggagtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngacc 119  Q
    ||||||||||||||| || | |||| ||||||||||||||||||||||||||||||||||||| |   |||||||||||||||| ||||       ||||    
T  45645489 aacaaggagtcaaacacaacgagtaaactcagttttggagatgccgctgtggtttcgggtgacaa---tgttgtgtcaactcctataataaaaaaagacc 45645585  T
Q  120 c---agttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatga 204  Q
    |   ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||    
T  45645586 cttcagtttactacgttttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgatga 45645673  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 1390499 - 1390533
Alignment:
Q  144 aagcatttagtgttggaaacaaaagagtagaattt 178  Q
    |||||||||||||||||||||||||||||||||||    
T  1390499 aagcatttagtgttggaaacaaaagagtagaattt 1390533  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 40718020 - 40718154
Alignment:
Q  46 actcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngaccc---agttttctactttttgacatta 142  Q
    |||||||||||||||||||||||||||||| ||||| ||   |||| ||||||||||| || |       |||||   ||||||||||| |||||||||     
T  40718020 actcagttttggagatgccgctgtggtttctggtgagga---tgttttgtcaactcctatagtgaaaaaagaccccacagttttctactatttgacattg 40718116  T
Q  143 caagcatttagtgttggaaacaaaagagtagaatttgg 180  Q
     |||||||||||||||||||||||||| ||||||||||    
T  40718117 gaagcatttagtgttggaaacaaaagaatagaatttgg 40718154  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 14183338 - 14183406
Alignment:
Q  121 agttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttc 189  Q
    ||||||||||| |||||||||  |||||||||||||||| ||||||||| ||||||||| ||| |||||    
T  14183338 agttttctactatttgacattggaagcatttagtgttggtaacaaaagaatagaatttgaagggtcttc 14183406  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 14192295 - 14192350
Alignment:
Q  128 tactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggagg 183  Q
    |||| |||||||||  ||||||||||||||||||| | |||||||||| |||||||    
T  14192295 tactatttgacattggaagcatttagtgttggaaatagaagagtagaaattggagg 14192350  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 14201301 - 14201350
Alignment:
Q  134 ttgacattacaagcatttagtgttggaaacaaaagagtagaatttggagg 183  Q
    ||||||||| ||||||||||||| |||||||||  | |||||||||||||    
T  14201301 ttgacattagaagcatttagtgtgggaaacaaattaatagaatttggagg 14201350  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 34303063 - 34303119
Alignment:
Q  123 ttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttg 179  Q
    ||||||||| ||||||| || |||||||||| |||||| ||||||||||||||||||    
T  34303063 ttttctactatttgacaatagaagcatttagcgttggagacaaaagagtagaatttg 34303119  T

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