View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18735_low_16 (Length: 210)
Name: NF18735_low_16
Description: NF18735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18735_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 31234506 - 31234328
Alignment:
| Q |
11 |
tagattatactaataaattttgtagatactctaatctaataacaatctaatagcttcaatatatctgcatttacatactaatagcttaaatgttacttat |
110 |
Q |
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| T |
31234506 |
tagattatactaataaattttgtagatactctaatctaataacaatctaatagcttcaatatatctgcatttacatactaatagcttaaatgttacttat |
31234407 |
T |
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| Q |
111 |
cacaaacttcgctttctatgtggcttatgtttaacaaagaattgaagtgatcaataagacgttgtaattagaggttgat |
189 |
Q |
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| T |
31234406 |
cacaaacttcgctttctatgtggcttatgtttaacaaagaattgaagtgatcaataagacgttgtaattagaggttgat |
31234328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 31243575 - 31243494
Alignment:
| Q |
11 |
tagattatactaataaattttgtagatactctaatctaataacaatctaatagcttcaatatatctgcatttacatactaat |
92 |
Q |
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|||||||||||||||||||| |||||||||| || ||||| ||||| ||||| | |||||||| |||||| |||||||| |
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| T |
31243575 |
tagattatactaataaatttagtagatactccaaggaaataaatatctattagctactatatatcttcatttagatactaat |
31243494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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