View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18735_low_2 (Length: 615)

Name: NF18735_low_2
Description: NF18735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18735_low_2
NF18735_low_2
[»] chr8 (11 HSPs)
chr8 (25-379)||(45547376-45547730)
chr8 (401-610)||(45531373-45531586)
chr8 (412-610)||(23136651-23136856)
chr8 (494-610)||(23160795-23160913)
chr8 (486-599)||(8351403-8351518)
chr8 (486-599)||(17890663-17890778)
chr8 (486-599)||(18667056-18667170)
chr8 (486-599)||(35136919-35137034)
chr8 (495-599)||(25064194-25064300)
chr8 (486-574)||(45250800-45250890)
chr8 (486-528)||(19742782-19742824)
[»] scaffold0059 (2 HSPs)
scaffold0059 (412-610)||(66920-67117)
scaffold0059 (412-610)||(75025-75222)
[»] chr3 (7 HSPs)
chr3 (412-610)||(20919454-20919651)
chr3 (412-610)||(20928416-20928613)
chr3 (490-610)||(37198063-37198183)
chr3 (486-604)||(2765786-2765906)
chr3 (412-471)||(37198007-37198069)
chr3 (486-604)||(50246366-50246486)
chr3 (486-599)||(20783815-20783930)
[»] chr6 (3 HSPs)
chr6 (412-610)||(1607703-1607903)
chr6 (432-610)||(11550470-11550650)
chr6 (438-610)||(4856635-4856809)
[»] chr2 (6 HSPs)
chr2 (412-603)||(41747554-41747750)
chr2 (486-599)||(16139518-16139633)
chr2 (486-599)||(20103739-20103854)
chr2 (486-610)||(21120084-21120209)
chr2 (486-571)||(24971948-24972035)
chr2 (416-473)||(16311472-16311529)
[»] chr5 (2 HSPs)
chr5 (432-610)||(9662767-9662947)
chr5 (486-573)||(27588856-27588945)
[»] chr4 (2 HSPs)
chr4 (412-474)||(35648158-35648220)
chr4 (486-599)||(14252977-14253092)
[»] scaffold0155 (1 HSPs)
scaffold0155 (486-610)||(26886-27011)
[»] chr1 (1 HSPs)
chr1 (486-610)||(45915205-45915330)
[»] chr7 (1 HSPs)
chr7 (486-610)||(29494217-29494343)
[»] scaffold0216 (2 HSPs)
scaffold0216 (486-588)||(18275-18379)
scaffold0216 (486-604)||(25465-25585)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 25 - 379
Target Start/End: Complemental strand, 45547730 - 45547376
Alignment:
Q  25 gattgatagacataatcgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatataacttctgatttttgtttgaggttgacgagaaat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  45547730 gattgatagacataatcgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatgtaacatctgatttttgtttgaggttgacgagaaat 45547631  T
Q  125 cgttcaaaggatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagtgatatta 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45547630 cgttcaaaggatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagagatatta 45547531  T
Q  225 tcgttagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaagatgg 324  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547530 tcattagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaagatgg 45547431  T
Q  325 tttctctgaaaatattaaaataagtgaaaaggaggaagccaatccagaccgtact 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547430 tttctctgaaaatattaaaataagtgaaaaggaggaagccaatccagaccgtact 45547376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 401 - 610
Target Start/End: Complemental strand, 45531586 - 45531373
Alignment:
Q  401 ccatctctttatcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn----catagaagttt 496  Q
    |||||||||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||             |||||||||||    
T  45531586 ccatctctttctcctccataaacaaattcataagagaaagtattttatgtgttttaaaagcatggaagttttttgtaaaaaaaaaaaaacatagaagttt 45531487  T
Q  497 aatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 596  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45531486 aatcacttggttgtagattatggagttgattttattttttgtgtatcttattgttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 45531387  T
Q  597 ctatattcttcgac 610  Q
    ||||||||||||||    
T  45531386 ctatattcttcgac 45531373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 412 - 610
Target Start/End: Original strand, 23136651 - 23136856
Alignment:
Q  412 tcctccataaacaaattcataaaagaaa-----gtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcactt 504  Q
    |||||||||||||||||||||||| |||     |||| | ||||||||||||||||||||||||||||||           |||||||||||||||||||    
T  23136651 tcctccataaacaaattcataaaaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaacaacatagaagtttaatcactt 23136750  T
Q  505 ggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattc 604  Q
    ||||||||||| ||| |||||||| |||||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||     
T  23136751 ggttgtagattttggggttgattttattttttgtgtatcttattgttaattgttaattctactttctcaggatcccattgaagagcatgtgtctatatta 23136850  T
Q  605 ttcgac 610  Q
    ||||||    
T  23136851 ttcgac 23136856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 494 - 610
Target Start/End: Complemental strand, 23160913 - 23160795
Alignment:
Q  494 tttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagca 591  Q
    |||||||| ||||||||||||||||| | |||||| |||||||  |||||||| || ||| || | ||||| |||||||||| | | |||||| ||||||    
T  23160913 tttaatcaattggttgtagattatggggctgattttattttttatgtgtatctaattgtttattgctaattctactttctcaaggttccattggagagca 23160814  T
Q  592 tgtgtctatattcttcgac 610  Q
    |||||||  ||||||||||    
T  23160813 tgtgtctccattcttcgac 23160795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 8351403 - 8351518
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  8351403 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcaaggttccatt 8351502  T
Q  584 gaagagcatgtgtcta 599  Q
    | ||||||||||||||    
T  8351503 ggagagcatgtgtcta 8351518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 17890778 - 17890663
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||| | | | |||||    
T  17890778 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttcttagggttccatt 17890679  T
Q  584 gaagagcatgtgtcta 599  Q
    | ||||||||||||||    
T  17890678 ggagagcatgtgtcta 17890663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 18667056 - 18667170
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||||||||||| ||||||||||||||| | | ||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  18667056 cataaaagtttaatcatttggttgtagattatagggctgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 18667154  T
Q  584 gaagagcatgtgtcta 599  Q
    | ||||||||||||||    
T  18667155 ggagagcatgtgtcta 18667170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 35136919 - 35137034
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||| |||||||||||||||||||| |||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  35136919 catataagattaatcacttggttgtagatcatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 35137018  T
Q  584 gaagagcatgtgtcta 599  Q
    | |||||| |||||||    
T  35137019 ggagagcacgtgtcta 35137034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 599
Target Start/End: Original strand, 25064194 - 25064300
Alignment:
Q  495 ttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcat 592  Q
    ||||||||||||||||  ||||||| |||||||| ||||||  | ||||||| || ||| || ||||||  |||||| ||| | | |||||| |||||||    
T  25064194 ttaatcacttggttgtcaattatggggttgattttattttttatttgtatctaattgtttattgttaatgctactttatcagggttccattggagagcat 25064293  T
Q  593 gtgtcta 599  Q
    |||||||    
T  25064294 gtgtcta 25064300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 574
Target Start/End: Complemental strand, 45250890 - 45250800
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcat 574  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||||    
T  45250890 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcat 45250800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 528
Target Start/End: Original strand, 19742782 - 19742824
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgattt 528  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||    
T  19742782 catataagattaatcacttggttgtagattatggggttgattt 19742824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 412 - 610
Target Start/End: Complemental strand, 67117 - 66920
Alignment:
Q  412 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 511  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  67117 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 67019  T
Q  512 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 610  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  67018 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 66920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 412 - 610
Target Start/End: Complemental strand, 75222 - 75025
Alignment:
Q  412 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 511  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  75222 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 75124  T
Q  512 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 610  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  75123 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 75025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 412 - 610
Target Start/End: Original strand, 20919454 - 20919651
Alignment:
Q  412 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 511  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  20919454 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20919552  T
Q  512 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 610  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  20919553 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 20919651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 412 - 610
Target Start/End: Original strand, 20928416 - 20928613
Alignment:
Q  412 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 511  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  20928416 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20928514  T
Q  512 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 610  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  20928515 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtctatattcttcgac 20928613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 490 - 610
Target Start/End: Original strand, 37198063 - 37198183
Alignment:
Q  490 gaagtttaatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagag 589  Q
    |||||||||||||||||||||| ||||||  ||| |||| |||||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||    
T  37198063 gaagtttaatcacttggttgtatattatgaggtttattttattttttgtgtatcttattgttaattgttaattctactttctcaggaacccattgaagag 37198162  T
Q  590 catgtgtctatattcttcgac 610  Q
    |||||||||||||| ||||||    
T  37198163 catgtgtctatattattcgac 37198183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 604
Target Start/End: Complemental strand, 2765906 - 2765786
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgt--gtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||  |||||| |  |||||| || |||||| ||| ||| |||||||||| | |||||||    
T  2765906 catagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgattctactttctcagggtcccatt 2765807  T
Q  584 gaagagcatgtgtctatattc 604  Q
    | |||||||||||||| ||||    
T  2765806 ggagagcatgtgtctacattc 2765786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 412 - 471
Target Start/End: Original strand, 37198007 - 37198069
Alignment:
Q  412 tcctccataaacaaattcataaaagaaa---gtatttcctgtgttttaaaagcatggaagttt 471  Q
    |||||||||||||||||||||||| |||   |||||| |||||||||||||||||||||||||    
T  37198007 tcctccataaacaaattcataaaaaaaaaaagtattttctgtgttttaaaagcatggaagttt 37198069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 486 - 604
Target Start/End: Complemental strand, 50246486 - 50246366
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||||||||||||||| || |||||| ||||| | ||||||||  |||||  | ||||||| || |||||| ||| ||  |||||||||| ||||| |||    
T  50246486 catagaagtttaatcatttagttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgatgctactttctcaggatcctatt 50246387  T
Q  584 gaagagcatgtgtctatattc 604  Q
    | ||||||||| |||||||||    
T  50246386 ggagagcatgtttctatattc 50246366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 20783930 - 20783815
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | |  ||||    
T  20783930 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggtttcatt 20783831  T
Q  584 gaagagcatgtgtcta 599  Q
    | ||||||||||||||    
T  20783830 ggagagcatgtgtcta 20783815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 412 - 610
Target Start/End: Complemental strand, 1607903 - 1607703
Alignment:
Q  412 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttg 509  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  1607903 tcctccataaacaaattcataaaaaaaagtattttctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttggttg 1607804  T
Q  510 tagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcga 609  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||    
T  1607803 tagattatggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtctatattattcga 1607704  T
Q  610 c 610  Q
    |    
T  1607703 c 1607703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 432 - 610
Target Start/End: Original strand, 11550470 - 11550650
Alignment:
Q  432 aaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttc 529  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||           |||||||||||||||| ||||||||||||| ||| ||||||||     
T  11550470 aaaaaaaagtatattctgtgttttaaaagcatggaagttttttgttaaaaaaaaaacatagaagtttaatcatttggttgtagattttggggttgatttt 11550569  T
Q  530 attttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 610  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  11550570 attttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaggagcatgtgtctatattattcgac 11550650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 438 - 610
Target Start/End: Complemental strand, 4856809 - 4856635
Alignment:
Q  438 aagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttcattttt 535  Q
    |||||| | ||||||||||||||||||||||||||||||           |||| ||||||||||| ||||||||||||| ||| |||||||| ||||||    
T  4856809 aagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacataaaagtttaatcatttggttgtagattttggggttgattttattttt 4856710  T
Q  536 tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 610  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||  ||||||||||||||||| ||||||    
T  4856709 tgtgtatcttattgttaatcgttaattctactttctcaggatcccattgtggagcatgtgtctatattattcgac 4856635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 412 - 603
Target Start/End: Original strand, 41747554 - 41747750
Alignment:
Q  412 tcctccataaacaaattcataaaagaaa---gtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttgg 506  Q
    |||||||||||||||||||||||| |||   |||| | ||||||||||||||||||||||||||||||           |||||||||||||||||||||    
T  41747554 tcctccataaacaaattcataaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttgg 41747653  T
Q  507 ttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatatt 603  Q
    ||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  41747654 ttgtagattttggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtctatatt 41747750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 16139518 - 16139633
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||  | ||||||| || ||| || | ||||  |||||||||| | | |||||    
T  16139518 catataagtttaatcacttggttgtagattatggagttgattttcttttttatttgtatctaattgtttattgctaatgctactttctcagggttccatt 16139617  T
Q  584 gaagagcatgtgtcta 599  Q
    | |||| |||||||||    
T  16139618 ggagagtatgtgtcta 16139633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 599
Target Start/End: Original strand, 20103739 - 20103854
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  20103739 catataagattaatcacttggttgtagattatgtggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 20103838  T
Q  584 gaagagcatgtgtcta 599  Q
    | ||||||||||||||    
T  20103839 ggagagcatgtgtcta 20103854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 610
Target Start/End: Original strand, 21120084 - 21120209
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||||||||||||||| ||||||||||||| | | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||| | ||||| |    
T  21120084 catagaagtttaatcatttggttgtagattgtag-gttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcagggtcccact 21120182  T
Q  584 gaagagcatgtgtctatattcttcgac 610  Q
    | |||||||||||||| ||||| ||||    
T  21120183 ggagagcatgtgtctacattctacgac 21120209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 571
Target Start/End: Complemental strand, 24972035 - 24971948
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttct 571  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||    
T  24972035 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttct 24971948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 473
Target Start/End: Complemental strand, 16311529 - 16311472
Alignment:
Q  416 ccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttt 473  Q
    ||||||| || ||||||||| || ||||||  ||||||||||||||||||||| ||||    
T  16311529 ccataaaaaatttcataaaaaaaggtattttatgtgttttaaaagcatggaagatttt 16311472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 432 - 610
Target Start/End: Complemental strand, 9662947 - 9662767
Alignment:
Q  432 aaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttc 529  Q
    |||||||||||||| || ||||||||||||||||| |||||||||           |||||||||| ||||||||||||||||||||||  ||||||||     
T  9662947 aaaagaaagtattttctatgttttaaaagcatggatgttttttgtaaacaaaaaaacatagaagttaaatcacttggttgtagattatgtggttgatttt 9662848  T
Q  530 attttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtctatattcttcgac 610  Q
    ||||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  9662847 attttttatgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcaggtgtctatattattcgac 9662767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 573
Target Start/End: Original strand, 27588856 - 27588945
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctca 573  Q
    |||||||||||||||| ||| ||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||||    
T  27588856 catagaagtttaatcatttgattgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttctca 27588945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 412 - 474
Target Start/End: Original strand, 35648158 - 35648220
Alignment:
Q  412 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagtttttt 474  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  35648158 tcctccataaacaaattcataaaagaaagaattttctgtgttttaaaagcatggaagtttttt 35648220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 14253092 - 14252977
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  14253092 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 14252993  T
Q  584 gaagagcatgtgtcta 599  Q
    | ||||||||||||||    
T  14252992 ggagagcatgtgtcta 14252977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 610
Target Start/End: Original strand, 26886 - 27011
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    ||||||| |||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  26886 catagaaatttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 26984  T
Q  584 gaagagcatgtgtctatattcttcgac 610  Q
    | |||||||||||||| ||||| ||||    
T  26985 ggagagcatgtgtctacattctacgac 27011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 610
Target Start/End: Original strand, 45915205 - 45915330
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||||||||||| |||||||||||||||  |||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  45915205 cataaaagtttaatcatttggttgtagattatacagttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 45915303  T
Q  584 gaagagcatgtgtctatattcttcgac 610  Q
    | |||||||||||||| ||||| ||||    
T  45915304 ggagagcatgtgtctacattctacgac 45915330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 610
Target Start/End: Original strand, 29494217 - 29494343
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgt--gtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||| ||||||||||| ||||||||||||||| |  |||||||  |||||| |  |||||| || |||||| ||| ||  |||||| ||| | |||||||    
T  29494217 catataagtttaatcatttggttgtagattataggattgattttcttttttatttgtatctaattgttaattgttgatgctactttttcagggtcccatt 29494316  T
Q  584 gaagagcatgtgtctatattcttcgac 610  Q
    | |||||||||||||| ||||| ||||    
T  29494317 ggagagcatgtgtctacattctacgac 29494343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 588
Target Start/End: Original strand, 18275 - 18379
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || || ||| ||| ||  |||||||||| | |||||||    
T  18275 catagaagtttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgtcaatggttgatgctactttctcagggtcccatt 18374  T
Q  584 gaaga 588  Q
    |||||    
T  18375 gaaga 18379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 604
Target Start/End: Original strand, 25465 - 25585
Alignment:
Q  486 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 583  Q
    |||||||||||||||| ||||||||| |||||   ||||||||  |||||  | ||||||| || |||||| ||| ||  || ||||| | | |||||||    
T  25465 catagaagtttaatcatttggttgtaaattatatggttgattttcttttttatttgtatctaattgttaattgttgatgctattttcttagggtcccatt 25564  T
Q  584 gaagagcatgtgtctatattc 604  Q
    | |||||||||||||| ||||    
T  25565 ggagagcatgtgtctacattc 25585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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