View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18735_low_3 (Length: 434)
Name: NF18735_low_3
Description: NF18735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18735_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 2299887 - 2299471
Alignment:
| Q |
1 |
aattaaatgtaactatatatgtagtcgatatcataatacatcaacacttatgagatatcagacacgtctttattctgaagtgtaggtattagataaccga |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
2299887 |
aattaaatgtaactatatatgtagttgatatcataatacatcaacacttatgagatatcagacacgcctttattctgaagtgtaggtgttagataaccga |
2299788 |
T |
|
| Q |
101 |
tagctactgagattttgttgaaaacttaaaaagcatataatgcttataaggtttttctggagtcacaattgttgaaggaaaattaggatgattgactgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
2299787 |
tagctactgagattttgttgaaaacttaaaaagcatataatgcttataaggtttttctggagtcacgattgttgaaggaaaattaggatgattaactgaa |
2299688 |
T |
|
| Q |
201 |
tcaggaaaagcttgactctccaaacacagccctgcatgagctttataaacatatccacttttacccttcacatccttaatataattaccagtataaaact |
300 |
Q |
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| T |
2299687 |
tcaggaaaagcttgactttccaaacacagccctgcatgagctttatatacatatccacttttacccttcacatccttaatataattaccagtataaaact |
2299588 |
T |
|
| Q |
301 |
gcaaaccaggggcatttgtgtaaagctccaaaattctaccagatttcttatcatgaacttttgctgctagtttaatcatttttcctttttcaccatccaa |
400 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
2299587 |
gcaaacctggggcatttgtgtaaagctccaaaattctaccagatttcttatcatgaacttttgctgcaagtttaatcttttttcctttttcaccatccaa |
2299488 |
T |
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| Q |
401 |
cacataattaatgtcat |
417 |
Q |
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| T |
2299487 |
cacataattaatgtcat |
2299471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 3316774 - 3316688
Alignment:
| Q |
140 |
atgcttataaggtttttctggagtcacaattgttgaaggaaaattaggatgattgactgaatcaggaaaagcttgactctccaaaca |
226 |
Q |
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| T |
3316774 |
atgcttataaggcttttcttttgtaacaatagttgaaggaaaattaggatgattaacagaatcaggaaaagcttgactctccaaaca |
3316688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 3324084 - 3323998
Alignment:
| Q |
140 |
atgcttataaggtttttctggagtcacaattgttgaaggaaaattaggatgattgactgaatcaggaaaagcttgactctccaaaca |
226 |
Q |
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|||||| ||||| |||||| || ||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||| |
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| T |
3324084 |
atgcttgtaaggcttttcttttgtaacaatagttgaaggaaattttggatgattaacagaatcaggaaaagcttgactctccaaaca |
3323998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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