View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18735_low_5 (Length: 354)

Name: NF18735_low_5
Description: NF18735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18735_low_5
NF18735_low_5
[»] chr4 (9 HSPs)
chr4 (87-251)||(26831566-26831728)
chr4 (289-343)||(26831472-26831526)
chr4 (1-63)||(26831757-26831819)
chr4 (1-57)||(35808373-35808429)
chr4 (1-57)||(41956190-41956246)
chr4 (1-57)||(55669815-55669871)
chr4 (1-58)||(27839282-27839339)
chr4 (1-57)||(26040337-26040393)
chr4 (1-57)||(31755014-31755070)
[»] chr1 (6 HSPs)
chr1 (1-62)||(43433851-43433912)
chr1 (1-57)||(34874643-34874699)
chr1 (1-58)||(28850883-28850940)
chr1 (1-57)||(7190449-7190505)
chr1 (1-65)||(27209687-27209751)
chr1 (1-57)||(41147452-41147508)
[»] chr8 (1 HSPs)
chr8 (1-57)||(19389287-19389343)
[»] chr2 (3 HSPs)
chr2 (1-57)||(765127-765183)
chr2 (1-57)||(39401512-39401568)
chr2 (1-57)||(1321244-1321300)
[»] chr7 (2 HSPs)
chr7 (1-56)||(40763325-40763380)
chr7 (1-63)||(7322924-7322986)
[»] chr3 (4 HSPs)
chr3 (1-64)||(1803964-1804027)
chr3 (1-64)||(35306408-35306471)
chr3 (1-57)||(25102299-25102355)
chr3 (1-61)||(44695644-44695704)
[»] chr6 (1 HSPs)
chr6 (1-58)||(26572058-26572115)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 87 - 251
Target Start/End: Complemental strand, 26831728 - 26831566
Alignment:
Q  87 ctatatatatacaattttttgaggggtgtaaaattatgaactaaacacttnnnnnnnntaccgaagaatcaaatttcaannnnnnnnactctgaagcaag 186  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||        |||||||||||||||||||||        |||||||||||||    
T  26831728 ctatatatatacaattttttgaggaatgtaaaattatgaactaaacacttaaaagaa-taccgaagaatcaaatttcaatttcttttactctgaagcaag 26831630  T
Q  187 ttattcctgagagtagtttttgagtttgtgaaacaaacaccccttcgatagaaggacattctcac 251  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26831629 ttattcttgagagtagtttttgagtttgtgaaacaaacacccc-tcgatagaaggacattctcac 26831566  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 26831526 - 26831472
Alignment:
Q  289 aaatcaaatagagtggtgataattttgcgaaaattattattttacttttcatttt 343  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  26831526 aaatcaaatccagtggtaataattttgcgaaaattattattttacttttcatttt 26831472  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26831819 - 26831757
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctccaaaaaa 63  Q
    ||||||||||||||||| |||||| ||||| ||||| | |||||||||| |||||||||||||    
T  26831819 atatttctatttttatcctcttattcaatgccccaaggacaattgttagcattctccaaaaaa 26831757  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35808429 - 35808373
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||||||||||||||  ||||||||||| ||||| |||||| ||||| |||||||    
T  35808429 atatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 35808373  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41956246 - 41956190
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    ||||||||||||||||| |||||||| ||| ||||| |||||| ||||| |||||||    
T  41956246 atatttctatttttatcctcttatccgatgccccaagggcaatggttagcattctcc 41956190  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 55669815 - 55669871
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||||||||||||||  ||||||||||| ||||| |||||| ||||| |||||||    
T  55669815 atatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 55669871  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27839339 - 27839282
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcca 58  Q
    ||||||||||||||||   ||||||||||| ||||| |||||| ||||| ||||||||    
T  27839339 atatttctatttttattcccttatccaatgccccaagggcaatggttagcattctcca 27839282  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26040393 - 26040337
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||||||||||||||  ||||||||||| ||||| | |||| ||||| |||||||    
T  26040393 atatttctatttttatccccttatccaatgccccaaggacaatggttagcattctcc 26040337  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31755014 - 31755070
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||| ||||||||||  ||||||||||  |||||||||||| ||||| |||||||    
T  31755014 atatttatatttttatccccttatccaataccccaatggcaatggttagcattctcc 31755070  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43433851 - 43433912
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctccaaaaa 62  Q
    |||||||||||||||||  ||||||||||| |||||  ||||| ||||| ||||||||||||    
T  43433851 atatttctatttttatccccttatccaatgccccaagagcaatagttagcattctccaaaaa 43433912  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34874643 - 34874699
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||||||||||||||  ||||||||||| ||||| |||||| ||||| |||||||    
T  34874643 atatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 34874699  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28850940 - 28850883
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcca 58  Q
    ||||||||||||||||  ||||||| |||| ||||| |||||| ||||| ||||||||    
T  28850940 atatttctatttttattctcttatctaatgccccaagggcaatggttagcattctcca 28850883  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7190505 - 7190449
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    ||||||||||||||||| ||||| |||||| ||||| |||||  ||||| |||||||    
T  7190505 atatttctatttttatcctcttaaccaatgccccaagggcaaaggttagcattctcc 7190449  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27209751 - 27209687
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctccaaaaaatt 65  Q
    |||||||||||||||||   |||||||||| ||||| | |||| ||||| |||||||| ||||||    
T  27209751 atatttctatttttatccctttatccaatgccccaaggacaatggttagcattctccataaaatt 27209687  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41147508 - 41147452
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||||||||||||||  ||||||||||| ||||| | |||| ||||| |||||||    
T  41147508 atatttctatttttatccccttatccaatgccccaaggacaatggttagcattctcc 41147452  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 19389343 - 19389287
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||||||||||||||  ||||||||||| ||||| |||||| ||||| |||||||    
T  19389343 atatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 19389287  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 765183 - 765127
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||||||||||||||  ||||||||||| ||||| |||||| ||||| |||||||    
T  765183 atatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 765127  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39401568 - 39401512
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||||||||||||||  ||||||||||| ||||| |||||| ||||| |||||||    
T  39401568 atatttctatttttatccccttatccaatgccccaagggcaatggttagcattctcc 39401512  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1321244 - 1321300
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    ||||||||||||||||| ||||||||||||  |||| | |||| ||||| |||||||    
T  1321244 atatttctatttttatcctcttatccaatgctccaaggacaatggttagcattctcc 1321300  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 40763325 - 40763380
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctc 56  Q
    |||||||||||||||||  ||||||||||| ||||| |||||| ||||| ||||||    
T  40763325 atatttctatttttatccccttatccaatgccccaagggcaatggttagcattctc 40763380  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7322986 - 7322924
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctccaaaaaa 63  Q
    ||||||||||||||||| |||||||||||  | ||| |||||| ||||| |||||||| ||||    
T  7322986 atatttctatttttatcctcttatccaatatctcaagggcaatggttagcattctccataaaa 7322924  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1803964 - 1804027
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctccaaaaaat 64  Q
    |||||||||||||||||  ||||||||||| ||||| | ||||  |||| ||||||||||||||    
T  1803964 atatttctatttttatccccttatccaatgccccaaggacaatgattagcattctccaaaaaat 1804027  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35306408 - 35306471
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctccaaaaaat 64  Q
    |||||||||||||||||  ||||||||||  ||||| |||||| ||||||||||| || |||||    
T  35306408 atatttctatttttatccccttatccaattgcccaagggcaatggttagtattcttcataaaat 35306471  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25102355 - 25102299
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcc 57  Q
    |||||||||||||||||   |||||||||| ||||| |||||| ||||| |||||||    
T  25102355 atatttctatttttatctcattatccaatgtcccaagggcaatggttagcattctcc 25102299  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44695704 - 44695644
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctccaaaa 61  Q
    |||||| ||||||||||  ||||||||||| ||||||| ||||  |||| |||||||||||    
T  44695704 atatttatatttttatccccttatccaatgtcccaatgacaatgattagcattctccaaaa 44695644  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26572115 - 26572058
Alignment:
Q  1 atatttctatttttatcatcttatccaatgacccaatggcaattgttagtattctcca 58  Q
    |||||||||||||||||  ||||||||||| ||||| | |||| ||||| ||||||||    
T  26572115 atatttctatttttatccccttatccaatgccccaaggacaatggttagcattctcca 26572058  T

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