View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18735_low_8 (Length: 285)
Name: NF18735_low_8
Description: NF18735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18735_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 13601789 - 13601537
Alignment:
| Q |
16 |
atgaataagaataaactaaacatagacttgtggattctccagcaagtatgcttccacaactttgcatattccaatagagttttcccttccttcctttatc |
115 |
Q |
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| T |
13601789 |
atgaataagaataaactaaacatagacttgtggattctccagcaagtatgcttccacaactttgcatattccaatagagttttcccttccttcctttatc |
13601690 |
T |
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| Q |
116 |
tcttcctctttgacttcaaaatctccaatagcattgtatttgcttgtcattttacaaagacaacctccatcattaatggcctcaaatttaacctcataag |
215 |
Q |
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| T |
13601689 |
tcttcctctttgacttcaaaatccccaatagcattgtatttgcttgtcattttacaaagacaacctccatcatcaatggcctcaaacttaacctcataag |
13601590 |
T |
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| Q |
216 |
caattgactcaagcttgtcacctagtggatctccttcaatcattgtgtagttg |
268 |
Q |
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| T |
13601589 |
caattgactcaagcttgtcacctaatggatctccttcaatcatagtgtagttg |
13601537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 264
Target Start/End: Original strand, 50000099 - 50000327
Alignment:
| Q |
36 |
catagacttgtggattctccagcaagtatgcttccacaactttgcatattccaatagagttttcccttccttcctttatctcttcctctttgacttcaaa |
135 |
Q |
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| T |
50000099 |
catagacttgtggattctccagcagatatgactccacaacttcgtaaattccaatggtgctttcccttccttcctttacatcttcttctttaacatcaaa |
50000198 |
T |
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| Q |
136 |
atctccaatagcattgtatttgcttgtcattttacaaagacaacctccatcattaatggcctcaaatttaacctcataagcaattgactcaagcttgtca |
235 |
Q |
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| T |
50000199 |
atctccaatagtcttgtaactgcttgccattttacatagacaacctccatcatttgtagcctcaaacttcacctcataagcaattgattccagcttgtcc |
50000298 |
T |
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| Q |
236 |
cctagtggatctccttcaatcattgtgta |
264 |
Q |
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| T |
50000299 |
cctaatggatccccttcaatcatagtgta |
50000327 |
T |
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