View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18737_high_10 (Length: 502)
Name: NF18737_high_10
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 23 - 492
Target Start/End: Original strand, 51403136 - 51403605
Alignment:
| Q |
23 |
aggtcgaagtgagaaattcctacacacagttttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttcttcttattccta |
122 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403136 |
aggtcgaagcgagaaattcctacacacagttttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttcttcttattccta |
51403235 |
T |
|
| Q |
123 |
gtaggtcttgaactcgacatgcgttcaatccgtagaacaggtaaaaaagccttagcaattgccctctgtggaatcacattcccatttgttcttggcatag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51403236 |
gtaggtcttgaactcgacatgcgttcaatccgtagaacaggtaaaaaagccttagcaattgccctttgtggaatcacattcccatttgttcttggcatag |
51403335 |
T |
|
| Q |
223 |
gaacatccattgttcttagagccacaatctccaaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgt |
322 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403336 |
gaacatccgttgttcttagagccacaatctccaaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgt |
51403435 |
T |
|
| Q |
323 |
cctcgctcgaatcctagctgagctcaaactgctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtactt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403436 |
cctcgctcgaatcctagctgagctcaaactgctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtactt |
51403535 |
T |
|
| Q |
423 |
ctcgctctagccatatcattatctggcgatgacacgtcgcccctgatttcactttgggttatgctctgtg |
492 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403536 |
cttgctctagccatatcattatctggcgatgacacgtcgcccctgatttcactttgggttatgctctgtg |
51403605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 54 - 430
Target Start/End: Complemental strand, 29983660 - 29983284
Alignment:
| Q |
54 |
ttcccaaagagaagcttaacagtcctagacacactagccaacattggtcttttgttcttcttattcctagtaggtcttgaactcgacatgcgttcaatcc |
153 |
Q |
| |
|
||||| || |||||||||||||| || || ||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||| || | |
|
|
| T |
29983660 |
ttccctaaaagaagcttaacagttcttgatacactagccaacattggcctgctattcttcttatttctagtaggtcttgaactcgacatgcgttcgatac |
29983561 |
T |
|
| Q |
154 |
gtagaacaggtaaaaaagccttagcaattgccctctgtggaatcacattcccatttgttcttggcataggaacatccattgttcttagagccacaatctc |
253 |
Q |
| |
|
| | ||||||| |||||||||| || ||||| |||||||||| |||||||||| |||||||| || || || |||||||| | |||||||| |
|
|
| T |
29983560 |
gcaaaacaggttcaaaagccttatgcatagcccttgctggaatcacagtcccatttgtacttggcattggcacctcacttgttcttcgtgccacaataaa |
29983461 |
T |
|
| Q |
254 |
caaaggtgcacaacctgtccctttccttgtcttcatgggtgttgctctctcaatcacagcatttcccgtcctcgctcgaatcctagctgagctcaaactg |
353 |
Q |
| |
|
||||| ||| | || | |||||||| |||||||| ||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
29983460 |
caaagatgctaatccaacttccttccttgttttcatgggcgttgctctctcgatcacagcctttcctgtccttgctcgaatcctagctgaactcaaactc |
29983361 |
T |
|
| Q |
354 |
ctaaccacggatgttggtcgtatagcaatgtcagcagctgctgttaatgatgttgcagcctgggtacttctcgctct |
430 |
Q |
| |
|
|| || || ||||||||||| || ||||||||||| |||||||| ||||| || || || ||| ||||||| ||||| |
|
|
| T |
29983360 |
ctcacaaccgatgttggtcggatggcaatgtcagctgctgctgtcaatgacgtcgctgcttggatacttcttgctct |
29983284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University