View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_high_13 (Length: 443)
Name: NF18737_high_13
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 4 - 430
Target Start/End: Original strand, 49703179 - 49703605
Alignment:
| Q |
4 |
ctcatagacaagggtgcagacatattttgtgttgatgcagggcatctagcatgctctgcagttgataaaaatagcattgaattgcttaaggaactcaaag |
103 |
Q |
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| T |
49703179 |
ctcatagacaagggtgcagacatattttgtgttgatgcagggcatctagcatgctctgcagttgataaaaatagcattgaattgcttaaggaactcaaag |
49703278 |
T |
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| Q |
104 |
aactcggcgtggatgtgacaaaacccgaaatgagcggaatcactgccctgcataaagcagtaagtgacagaaatgtagagatggtaaagttccttttgga |
203 |
Q |
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| T |
49703279 |
aactcggtgtggatgtgacaaaacccgaaatgagcggaatcactgccctgcataaagcagtaagtgacagaaatgtagagatggtaaagttccttttgga |
49703378 |
T |
|
| Q |
204 |
cctaggagctgaagttgatatgcaagatgatcatggctggactccaagggctttggcagaaaatcaaggccacgacgaaattcaaaatatattccaaaac |
303 |
Q |
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| T |
49703379 |
cctaggagctaaagttgatatgcaagatgatcatggctggactccaagggctttggcagaaaatcaaggccacgatgaaattaaaaatatattccaaaac |
49703478 |
T |
|
| Q |
304 |
attaaagaaaacaaacaaatagcacctgttagtccaataccagaagatggtacgcctaatgtgtcgtcgtttcaaagtgcacccgttatgcctgatgctc |
403 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49703479 |
attaaagaaaacaaacaaacagcacctgttagtccaataccagaagatggtacgcctaatgtgtcgtcgtttcaaagtgcacccgttatgcctgatgctc |
49703578 |
T |
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| Q |
404 |
gtggatccctagataacatgctacaac |
430 |
Q |
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| T |
49703579 |
gtggatccctagataacatgctacaac |
49703605 |
T |
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