View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18737_high_14 (Length: 438)

Name: NF18737_high_14
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18737_high_14
NF18737_high_14
[»] chr8 (14 HSPs)
chr8 (19-424)||(7388024-7388430)
chr8 (168-303)||(2148338-2148473)
chr8 (166-273)||(10381373-10381479)
chr8 (184-303)||(29841185-29841304)
chr8 (138-300)||(7681384-7681545)
chr8 (180-273)||(43421477-43421570)
chr8 (153-300)||(44873224-44873370)
chr8 (177-227)||(32161484-32161534)
chr8 (167-247)||(37042524-37042604)
chr8 (178-248)||(29866126-29866195)
chr8 (168-248)||(24556977-24557056)
chr8 (178-212)||(7392173-7392207)
chr8 (186-235)||(6978416-6978465)
chr8 (192-248)||(36051241-36051297)
[»] chr2 (5 HSPs)
chr2 (141-302)||(27447722-27447883)
chr2 (136-273)||(38417711-38417848)
chr2 (138-300)||(7700263-7700424)
chr2 (139-224)||(16639293-16639378)
chr2 (192-248)||(37623576-37623632)
[»] chr5 (11 HSPs)
chr5 (178-303)||(5568976-5569101)
chr5 (178-288)||(980181-980291)
chr5 (178-299)||(33824755-33824876)
chr5 (184-303)||(39509128-39509247)
chr5 (166-300)||(34751098-34751231)
chr5 (178-300)||(36744901-36745022)
chr5 (138-287)||(25818999-25819149)
chr5 (166-284)||(26459644-26459761)
chr5 (181-243)||(35676332-35676394)
chr5 (180-248)||(43144527-43144594)
chr5 (178-227)||(5069805-5069854)
[»] chr3 (18 HSPs)
chr3 (135-273)||(30136505-30136642)
chr3 (135-273)||(30142634-30142771)
chr3 (135-273)||(30146056-30146193)
chr3 (136-273)||(6714416-6714552)
chr3 (178-300)||(23778219-23778345)
chr3 (139-273)||(24309801-24309934)
chr3 (184-273)||(26285869-26285957)
chr3 (192-288)||(395927-396023)
chr3 (166-284)||(7856449-7856568)
chr3 (184-248)||(25032174-25032237)
chr3 (139-211)||(35504214-35504286)
chr3 (167-227)||(36475420-36475480)
chr3 (184-273)||(36478231-36478319)
chr3 (355-424)||(30136728-30136799)
chr3 (355-424)||(30142857-30142928)
chr3 (355-424)||(30146279-30146350)
chr3 (178-212)||(19832034-19832068)
chr3 (184-212)||(19831986-19832014)
[»] chr6 (9 HSPs)
chr6 (134-303)||(1975270-1975439)
chr6 (166-273)||(16461677-16461783)
chr6 (188-282)||(8150815-8150909)
chr6 (188-287)||(30702669-30702768)
chr6 (182-248)||(2919958-2920023)
chr6 (136-206)||(6689130-6689200)
chr6 (183-233)||(19267059-19267109)
chr6 (191-237)||(30705270-30705316)
chr6 (215-288)||(14607795-14607867)
[»] chr4 (11 HSPs)
chr4 (139-287)||(1111924-1112071)
chr4 (182-300)||(2158598-2158715)
chr4 (138-273)||(33517953-33518087)
chr4 (166-288)||(2813941-2814062)
chr4 (178-273)||(4377200-4377294)
chr4 (178-284)||(36247791-36247897)
chr4 (166-248)||(35390429-35390511)
chr4 (187-248)||(50723219-50723279)
chr4 (192-248)||(30804379-30804435)
chr4 (192-254)||(46671916-46671978)
chr4 (154-226)||(17938868-17938940)
[»] chr1 (12 HSPs)
chr1 (139-260)||(23347781-23347902)
chr1 (185-286)||(9539648-9539748)
chr1 (180-284)||(10781254-10781357)
chr1 (184-300)||(8064950-8065065)
chr1 (178-212)||(281144-281178)
chr1 (178-212)||(9516763-9516797)
chr1 (139-273)||(27464306-27464439)
chr1 (178-212)||(43909373-43909407)
chr1 (178-211)||(35438898-35438931)
chr1 (166-226)||(1405901-1405961)
chr1 (392-424)||(9477805-9477837)
chr1 (192-248)||(29703064-29703120)
[»] chr7 (19 HSPs)
chr7 (184-288)||(25232916-25233020)
chr7 (196-303)||(26787258-26787365)
chr7 (201-300)||(39785484-39785583)
chr7 (355-426)||(26787418-26787491)
chr7 (178-242)||(49143969-49144033)
chr7 (178-273)||(30074676-30074772)
chr7 (199-286)||(26824472-26824559)
chr7 (198-260)||(16841052-16841114)
chr7 (230-288)||(40716946-40717004)
chr7 (167-224)||(34346903-34346960)
chr7 (198-300)||(2945416-2945519)
chr7 (188-248)||(13094632-13094692)
chr7 (182-225)||(32221932-32221975)
chr7 (184-227)||(33941720-33941763)
chr7 (178-212)||(7899448-7899482)
chr7 (178-212)||(26050128-26050162)
chr7 (178-212)||(26059487-26059521)
chr7 (192-248)||(33255012-33255068)
chr7 (145-225)||(46090290-46090370)
[»] scaffold0002 (1 HSPs)
scaffold0002 (178-300)||(461348-461469)
[»] scaffold0535 (1 HSPs)
scaffold0535 (167-254)||(9625-9712)


Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 7388430 - 7388024
Alignment:
Q  19 aatattaaatcaaagaaagactaaaggtttatatgaaaaaacttaaatctaaatagttaagcttcatcgggaagcattcaaggaaattttcagatacttg 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7388430 aatattaaatcaaagaaagaccaaaggtttatatgaaaaaacttaaatctaaatagtta-gcttcatcgggaagcattcaaggaaattttcagatacttg 7388332  T
Q  119 aag-atacaatgaacaaagacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaac 217  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7388331 aaggatacaataaacaaagacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcagattatattaaaaataagaattaac 7388232  T
Q  218 attgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaattttttnnnnnnnnncatt 317  Q
    ||||||||||||||||||||||||||||||| |||||  | |||||||||||||||||||||||||||| || |||||||||||||          ||||    
T  7388231 attgtttgatgtaatacaattacaataaaaattgtcttctttccaattgttgaaaacgtgctaaaataaaaacattgctaattttt---aaaaaaacatt 7388135  T
Q  318 tatttctataaaagttacaaga----gatttagcaactagacacttattttgttacatattgaatgttcaaacttttttagctgaaaaaacatgtttaac 413  Q
    |||||||||| |||||||||||     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7388134 tatttctatataagttacaagacggtcatttagcaactagacatttattttgttacatattgaatgttcaaacttttttagctgaaaaaacatgttcaac 7388035  T
Q  414 acttgcaattg 424  Q
    |||||||||||    
T  7388034 acttgcaattg 7388024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 2148338 - 2148473
Alignment:
Q  168 aaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgt 267  Q
    ||||| ||| |||||  ||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||| ||||   ||| |||| || ||||    
T  2148338 aaaatttcaaagaaactataatgcaaattatactaaaaataagaaataacattgattgatgcaatacaattacaatgaaaataatctattatacatttgt 2148437  T
Q  268 tgaaaacgtgctaaaataacaatattgctaattttt 303  Q
    ||||||||  |||||||| ||  |||||||||||||    
T  2148438 tgaaaacgaactaaaatagcatcattgctaattttt 2148473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 10381373 - 10381479
Alignment:
Q  166 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 265  Q
    ||||||| ||| ||||| ||||||| ||| ||||||||||||||||| |||||||||||||| |||||| |||||||| |||| ||||||||||| | ||    
T  10381373 ctaaaatttcaaagaaacaataatgtaaactatattaaaaataagaagtaacattgtttgatataatac-attacaatcaaaattgtctcttatctattt 10381471  T
Q  266 gttgaaaa 273  Q
    ||||||||    
T  10381472 gttgaaaa 10381479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 184 - 303
Target Start/End: Complemental strand, 29841304 - 29841185
Alignment:
Q  184 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaa 283  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| ||| |||| |||||| |||| | |||||||||| | | |||||    
T  29841304 aataatgcaaactatataaaaaataagaaataacattgtttgatataatataattataatgaaaattgtctcatatctatttgttgaaaatgggttaaaa 29841205  T
Q  284 taacaatattgctaattttt 303  Q
    ||||||   |||||||||||    
T  29841204 taacaacggtgctaattttt 29841185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 138 - 300
Target Start/End: Complemental strand, 7681545 - 7681384
Alignment:
Q  138 cggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaat 237  Q
    |||||||||||||| |||||||| ||   |||||| ||| ||||| |||||| |||| ||||||||||| ||||| ||||||||||||||  ||||  ||    
T  7681545 cggatctagacatttggtatatgtgtggttaaaatttcaaagaaataataatacaaactatattaaaaacaagaaataacattgtttgatacaata-tat 7681447  T
Q  238 tacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaatt 300  Q
    |||||| ||||  || || |||||| |||||||||| || ||||||| |||  ||||||||||    
T  7681446 tacaatgaaaatcgtttcctatccatttgttgaaaatgttctaaaatgacatcattgctaatt 7681384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 43421477 - 43421570
Alignment:
Q  180 aaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    |||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||  ||||  |||| | ||||||||||    
T  43421477 aaaaaagaatgcaaactatattaaaaataagtaataacattgtttgatgcaatacaattacaataaaaatcgtcttctatctatttgttgaaaa 43421570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 300
Target Start/End: Original strand, 44873224 - 44873370
Alignment:
Q  153 ggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgt 252  Q
    |||| ||||| | ||||||| | | ||||| ||||||||||| ||||||||||||||||| ||| ||||||||||  ||||| |||||||| ||||  ||    
T  44873224 ggtacatgcggagctaaaattttaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatac-attacaatgaaaatcgt 44873322  T
Q  253 ctcttatccaattgttgaaaacgtgctaaaataacaatattgctaatt 300  Q
    ||  |||||| |||||||||| | | ||||||||||  ||||||||||    
T  44873323 cttctatccatttgttgaaaatgagttaaaataacatgattgctaatt 44873370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 32161534 - 32161484
Alignment:
Q  177 gagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgat 227  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32161534 gagaaaaaataatgcaaattatattaaaaataagaaataacattgtttgat 32161484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 37042604 - 37042524
Alignment:
Q  167 taaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaa 247  Q
    |||||| ||| ||||||||||||| | |||||||||||||||||||  || ||| ||| ||  ||||||||||||||||||    
T  37042604 taaaatttcaaagaaaaaataatgtagattatattaaaaataagaaaaaatattatttaatacaatacaattacaataaaa 37042524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 29866126 - 29866195
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    ||||||||||||||||| ||||||| ||||||||| ||| ||||||||||  ||||| |||||||| ||||    
T  29866126 agaaaaaataatgcaaactatattataaataagaaataatattgtttgatacaatac-attacaatgaaaa 29866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 24557056 - 24556977
Alignment:
Q  168 aaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    ||||| ||| ||||| ||||||  |||||||||||||||||| || ||||||||||||||  ||||| |||||||| ||||    
T  24557056 aaaatttcaaagaaacaataatttaaattatattaaaaataataaataacattgtttgatacaatac-attacaatgaaaa 24556977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 7392173 - 7392207
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  7392173 agaaataataatgcaaattatattaaaaataagaa 7392207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 6978465 - 6978416
Alignment:
Q  186 taatgcaaattatattaaaaataagaattaacattgtttgatgtaataca 235  Q
    ||||| ||| ||||||||||||||||| ||| |||||||||| |||||||    
T  6978465 taatgtaaactatattaaaaataagaaataatattgtttgatataataca 6978416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 36051241 - 36051297
Alignment:
Q  192 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    |||||||| ||||||||| || ||| ||||||||||  |||||| ||||||||||||    
T  36051241 aaattatagtaaaaataataaataatattgtttgattcaatacatttacaataaaaa 36051297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 302
Target Start/End: Complemental strand, 27447883 - 27447722
Alignment:
Q  141 atctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattac 240  Q
    ||||||||||| | |||||| ||  ||||||| ||| ||||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  27447883 atctagacatttgatatatgtgtggctaaaatttcaaagaaaaaataatgcagattatgttaaaaataagaaataatattgtttgatgtaatacaattac 27447784  T
Q  241 aataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaatttt 302  Q
    ||| |||| |||||| |||| | || ||| ||||| |||||||||||||||| |||||||||    
T  27447783 aatgaaaattgtctcatatctatttattggaaacgagctaaaataacaatatagctaatttt 27447722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 38417711 - 38417848
Alignment:
Q  136 gacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaataca 235  Q
    |||||||||||| |||||||||||| ||  ||||||| | | ||||||| ||||||||  ||||||||||||||||| |||| ||| |||||| ||||||    
T  38417711 gacggatctagatattcggtatatgtgtgcctaaaattttaaagaaaaactaatgcaagctatattaaaaataagaaataactttggttgatgcaataca 38417810  T
Q  236 attacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    |||||| | |||| |||||| |||||| ||||||||||    
T  38417811 attacagtgaaaattgtctcctatccatttgttgaaaa 38417848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 300
Target Start/End: Original strand, 7700263 - 7700424
Alignment:
Q  138 cggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaat 237  Q
    |||||||| ||||| | |||||| ||  ||||||| ||| ||||| ||||||| ||| ||||| ||||||||||| ||||||||||||||  ||||| ||    
T  7700263 cggatctacacatttgatatatgtgtggctaaaatttcaaagaaacaataatgtaaactatataaaaaataagaaataacattgtttgatacaatac-at 7700361  T
Q  238 tacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaatt 300  Q
    | |||| ||||   |||| ||| ||  ||||||||| | |||||||| |||  ||||||||||    
T  7700362 tgcaatgaaaatcatctcatattcatatgttgaaaatgagctaaaatgacatcattgctaatt 7700424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 16639378 - 16639293
Alignment:
Q  139 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgttt 224  Q
    |||| |||||||| ||||||||  | |||||||| | | ||||| |||||| |||| ||||||||||||||||| | |||||||||    
T  16639378 ggatttagacatttggtatatgtatgactaaaattttaaagaaacaataatacaaactatattaaaaataagaaattacattgttt 16639293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 37623632 - 37623576
Alignment:
Q  192 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    |||||||| ||||||||| || ||||||||||||||  |||||| ||| ||||||||    
T  37623632 aaattatactaaaaataataaataacattgtttgattcaatacatttaaaataaaaa 37623576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 178 - 303
Target Start/End: Original strand, 5568976 - 5569101
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 277  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||||| |||| |||||| |||||| |||||||||| | |    
T  5568976 agaaaaaataatgcaaactatattaaaaataagaaataacattggttgatgcaatacaattacaatgaaaattgtctcgtatccatttgttgaaaatgag 5569075  T
Q  278 ctaaaataacaatattgctaattttt 303  Q
     ||||||||||| |||||||||||||    
T  5569076 ttaaaataacaacattgctaattttt 5569101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 178 - 288
Target Start/End: Complemental strand, 980291 - 980181
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 277  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||||| | |||||||||| ||     
T  980291 agaaataataatgcaaattatattaaaaataagaaataacattgtttgatgtaatacaattacaataaaaatcatctattatctatttgttgaaaatgta 980192  T
Q  278 ctaaaataaca 288  Q
    |||||||||||    
T  980191 ctaaaataaca 980181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 299
Target Start/End: Complemental strand, 33824876 - 33824755
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 277  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||| ||||  ||||| ||| || |||||||||| | |    
T  33824876 agaaacaataatgcaaaatatattaaaaataagaaataacattgtttgatgcagtacaattacaatgaaaatcgtctcctattcatttgttgaaaatgag 33824777  T
Q  278 ctaaaataacaatattgctaat 299  Q
     ||||||||||  |||||||||    
T  33824776 ttaaaataacatcattgctaat 33824755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 39509128 - 39509247
Alignment:
Q  184 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaa 283  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||  |||||||||||||| |||| |||||   ||| | |||||||||| |  || |||    
T  39509128 aataatgcaaattatatgaaaaataagatataacattgtttgatacaatacaattacaatgaaaattgtcttccatcaatttgttgaaaatgaactgaaa 39509227  T
Q  284 taacaatattgctaattttt 303  Q
    ||||||| ||||| ||||||    
T  39509228 taacaatgttgctgattttt 39509247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 34751231 - 34751098
Alignment:
Q  166 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 265  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||| |||| ||| ||||   |||| | || | ||    
T  34751231 ctaaaatttcaaagaaacaataatgcaaattatattaaaaataagaagtaacattgtttgatacaatac-attaaaatgaaaatcatctcgtgtctattt 34751133  T
Q  266 gttgaaaacgtgctaaaataacaatattgctaatt 300  Q
    |||||||| | |||||||| |||  ||||||||||    
T  34751132 gttgaaaatgagctaaaatgacatcattgctaatt 34751098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 36744901 - 36745022
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 277  Q
    ||||| ||||||||||| |||||||||| |||||| ||| ||||||||||  |||| ||||||||| ||||  ||||  |||||| |||||||||| | |    
T  36744901 agaaacaataatgcaaactatattaaaagtaagaaataatattgtttgatacaata-aattacaattaaaatcgtcttatatccatttgttgaaaatgag 36744999  T
Q  278 ctaaaataacaatattgctaatt 300  Q
    ||||||| |||  ||||||||||    
T  36745000 ctaaaatgacatcattgctaatt 36745022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 287
Target Start/End: Original strand, 25818999 - 25819149
Alignment:
Q  138 cggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaata--atgcaaattatattaaaaataagaattaacattgtttgatgtaataca 235  Q
    |||||||||||||| |||| ||| |   ||||||| ||| ||||||||||  ||| ||| ||||||||||||| ||| |||||||||||||   |||||     
T  25818999 cggatctagacatttggtacatgtggggctaaaatttcaaagaaaaaatataatgtaaactatattaaaaataggaaataacattgtttgaaacaatac- 25819097  T
Q  236 attacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataac 287  Q
    ||||| || |||| |||||| |||||| ||||||||||   |||||||||||    
T  25819098 attacgatgaaaattgtctcctatccatttgttgaaaataagctaaaataac 25819149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 166 - 284
Target Start/End: Original strand, 26459644 - 26459761
Alignment:
Q  166 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 265  Q
    ||||||| ||| ||||| ||| |||||||  ||||||||||||||||  |||||||||||||  ||||| |||||||| ||||  || || |||||| ||    
T  26459644 ctaaaatttcaaagaaacaattatgcaaaccatattaaaaataagaaagaacattgtttgatacaatac-attacaatgaaaatcgtgtcctatccattt 26459742  T
Q  266 gttgaaaacgtgctaaaat 284  Q
    |||||||| | ||||||||    
T  26459743 gttgaaaatgagctaaaat 26459761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 35676394 - 35676332
Alignment:
Q  181 aaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaat 243  Q
    |||||||||||||| ||||||||||||||||| ||| ||||| ||||| || | |||||||||    
T  35676394 aaaaataatgcaaactatattaaaaataagaaataatattgtatgatgcaaaataattacaat 35676332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 43144527 - 43144594
Alignment:
Q  180 aaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    ||||||| ||||||| ||||||| ||||||||| ||||||||||||||  ||||| |||||||| ||||    
T  43144527 aaaaaattatgcaaactatattataaataagaaataacattgtttgatacaatac-attacaatgaaaa 43144594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 5069805 - 5069854
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgat 227  Q
    ||||| ||||||| ||| ||||||||||||||||| ||| ||||||||||    
T  5069805 agaaacaataatgtaaactatattaaaaataagaagtaatattgtttgat 5069854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 30136505 - 30136642
Alignment:
Q  135 agacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatac 234  Q
    |||||||||||||||||||||||||| || |||||||| | | | |||||||||||||||  |||| ||||||||||| ||||||||||||||  |||||    
T  30136505 agacggatctagacattcggtatatgtgtgactaaaattttaaa-aaaaaataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatac 30136603  T
Q  235 aattacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    |||| |||| ||||  ||||| |||||| ||||||||||    
T  30136604 aatttcaatgaaaatggtctcctatccatttgttgaaaa 30136642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 30142634 - 30142771
Alignment:
Q  135 agacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatac 234  Q
    |||||||||||||||||||||||||| || |||||||| | | | |||||||||||||||  |||| ||||||||||| ||||||||||||||  |||||    
T  30142634 agacggatctagacattcggtatatgtgtgactaaaattttaaa-aaaaaataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatac 30142732  T
Q  235 aattacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    |||| |||| ||||  ||||| |||||| ||||||||||    
T  30142733 aatttcaatgaaaatggtctcctatccatttgttgaaaa 30142771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 30146056 - 30146193
Alignment:
Q  135 agacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatac 234  Q
    |||||||||||||||||||||||||| || |||||||| | | | |||||||||||||||  |||| ||||||||||| ||||||||||||||  |||||    
T  30146056 agacggatctagacattcggtatatgtgtgactaaaattttaaa-aaaaaataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatac 30146154  T
Q  235 aattacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    |||| |||| ||||  ||||| |||||| ||||||||||    
T  30146155 aatttcaatgaaaatggtctcctatccatttgttgaaaa 30146193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 273
Target Start/End: Complemental strand, 6714552 - 6714416
Alignment:
Q  136 gacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaataca 235  Q
    |||||||||| |||||||||| ||  || |||||||| | | ||||| |||||||  |||||||||||||||||||| ||||| | ||||||||||||||    
T  6714552 gacggatctaaacattcggtagatatgtgactaaaattttaaagaaataataatgttaattatattaaaaataagaaataaca-tatttgatgtaataca 6714454  T
Q  236 attacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    |||||||| |||| |||||| |||| | ||||||||||    
T  6714453 attacaatgaaaattgtctcatatctatttgttgaaaa 6714416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 23778219 - 23778345
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaataca----attacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||||||  ||||||    |||||||||||||  |||||||||||| ||||||||||    
T  23778219 agaaaaaataatacaaactatattaaaaataagaaataacattgtttgatacaatacattacattacaataaaaatggtctcttatccatttgttgaaaa 23778318  T
Q  274 cgtgctaaaataacaatattgctaatt 300  Q
     | |||||||| |||  ||||||||||    
T  23778319 tgagctaaaatgacatcattgctaatt 23778345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 273
Target Start/End: Original strand, 24309801 - 24309934
Alignment:
Q  139 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaatt 238  Q
    ||||| |||| || |||| ||||| | ||||||| ||| ||||| ||||||||||| ||||||||||||||||| ||| ||||||||||  ||||| |||    
T  24309801 ggatccagactttaggtacatgcgaagctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatac-att 24309899  T
Q  239 acaataaaaactgtctcttatccaattgttgaaaa 273  Q
    ||||| ||||  ||||| |||||| ||||||||||    
T  24309900 acaatgaaaatcgtctcctatccatttgttgaaaa 24309934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 26285957 - 26285869
Alignment:
Q  184 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||  ||||| |||||||| ||||  || || |||||| ||||||||||    
T  26285957 aataatgcaaactatattaaaaataagaaataacattgtttgatacaatac-attacaatgaaaatcgtttcctatccatttgttgaaaa 26285869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 396023 - 395927
Alignment:
Q  192 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataaca 288  Q
    |||||||| |||||||||||| ||||||||||||||  |||||| |||| || |||| |||||   ||||| |||||||||| | ||||||||||||    
T  396023 aaattatactaaaaataagaaataacattgtttgatacaatacatttacgatgaaaattgtctaccatccatttgttgaaaatgagctaaaataaca 395927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 284
Target Start/End: Original strand, 7856449 - 7856568
Alignment:
Q  166 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaat--taacattgtttgatgtaatacaattacaataaaaactgtctcttatccaa 263  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||| |||   || ||||||||||  ||||| |||| ||||||||  ||||| ||||||     
T  7856449 ctaaaatttcaaagaaacaataatgcaaattatattaaaaataaaaataaaaatattgtttgatacaatac-attataataaaaatcgtctcctatccat 7856547  T
Q  264 ttgttgaaaacgtgctaaaat 284  Q
    ||||| |||| | ||||||||    
T  7856548 ttgttaaaaatgagctaaaat 7856568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 25032237 - 25032174
Alignment:
Q  184 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    |||||||||||||| |||||||||||||| ||||||||||||||  ||||| |||||||| ||||    
T  25032237 aataatgcaaattacattaaaaataagaaataacattgtttgatacaatac-attacaatgaaaa 25032174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 35504286 - 35504214
Alignment:
Q  139 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataaga 211  Q
    ||||||||| ||| ||| |||| ||  ||||||| | | ||||||||||||||||||||||||||||||||||    
T  35504286 ggatctagatatttggtgtatgtgtggctaaaatttaaaagaaaaaataatgcaaattatattaaaaataaga 35504214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 36475420 - 36475480
Alignment:
Q  167 taaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgat 227  Q
    |||||| ||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||    
T  36475420 taaaatttcaaagaaacaataacgcaaactatattaaaaataagaaataacattgtttgat 36475480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 36478319 - 36478231
Alignment:
Q  184 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    |||| |||||| ||||||||||||||||| ||| ||||||||||  |||||  ||||||| |||| ||||| | ||||| ||||||||||    
T  36478319 aatattgcaaactatattaaaaataagaaataatattgtttgatacaatac-gttacaattaaaattgtctttgatccatttgttgaaaa 36478231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 30136728 - 30136799
Alignment:
Q  355 cacttattttgttacata-ttgaatgttcaaacttttt-tagctgaaaaaacatgtttaacacttgcaattg 424  Q
    ||||||||||||| |||| |||| |||||| | ||||| |||||||||||||| ||| ||||||||||||||    
T  30136728 cacttattttgttgcatagttgattgttcacaatttttgtagctgaaaaaacacgttcaacacttgcaattg 30136799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 30142857 - 30142928
Alignment:
Q  355 cacttattttgttacata-ttgaatgttcaaacttttt-tagctgaaaaaacatgtttaacacttgcaattg 424  Q
    ||||||||||||| |||| |||| |||||| | ||||| |||||||||||||| ||| ||||||||||||||    
T  30142857 cacttattttgttgcatagttgattgttcacaatttttgtagctgaaaaaacacgttcaacacttgcaattg 30142928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 30146279 - 30146350
Alignment:
Q  355 cacttattttgttacata-ttgaatgttcaaacttttt-tagctgaaaaaacatgtttaacacttgcaattg 424  Q
    ||||||||||||| |||| |||| |||||| | ||||| |||||||||||||| ||| ||||||||||||||    
T  30146279 cacttattttgttgcatagttgattgttcacaatttttgtagctgaaaaaacacgttcaacacttgcaattg 30146350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 19832068 - 19832034
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  19832068 agaaacaataatgcaaattatattaaaaataagaa 19832034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 19832014 - 19831986
Alignment:
Q  184 aataatgcaaattatattaaaaataagaa 212  Q
    |||||||||||||||||||||||||||||    
T  19832014 aataatgcaaattatattaaaaataagaa 19831986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 134 - 303
Target Start/End: Complemental strand, 1975439 - 1975270
Alignment:
Q  134 aagacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaata 233  Q
    ||||||||||||||||||||||||||| ||   |||||| | | ||||||||||||| ||| |||||||||||||| || |||||||| |||||  ||||    
T  1975439 aagacggatctagacattcggtatatgtgtggttaaaattttaaagaaaaaataatgtaaactatattaaaaataataaataacattggttgattcaata 1975340  T
Q  234 caattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaattttt 303  Q
    |||| ||||| |||| |||||| | || | ||| |||||| | | |||||||| |  |||||||||||||    
T  1975339 caataacaatgaaaattgtctcatgtctatttgatgaaaatgagttaaaataatagcattgctaattttt 1975270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 16461783 - 16461677
Alignment:
Q  166 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 265  Q
    ||||||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||  ||||  |||||||| |||| |||||| ||| || ||    
T  16461783 ctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataacattgtttgatacaata-tattacaatgaaaattgtctcctattcattt 16461685  T
Q  266 gttgaaaa 273  Q
    ||||||||    
T  16461684 gttgaaaa 16461677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 8150909 - 8150815
Alignment:
Q  188 atgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaa 282  Q
    ||||| |||||| ||| || ||||||||||||||||||||| |||||||||||||||||||  ||||  |||||| |||||||||| | ||||||    
T  8150909 atgcagattatactaacaacaagaattaacattgtttgatgcaatacaattacaataaaaatcgtctactatccatttgttgaaaatgagctaaa 8150815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 30702669 - 30702768
Alignment:
Q  188 atgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataac 287  Q
    |||||||||||| |||||||||||| ||||||||||||||  |||||||| || |||||||  ||||  |||||| |||| ||||| | |||||||||||    
T  30702669 atgcaaattatactaaaaataagaaataacattgtttgatacaatacaatgacgataaaaatcgtctactatccagttgtcgaaaatgagctaaaataac 30702768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 2920023 - 2919958
Alignment:
Q  182 aaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||  ||||| |||||||| ||||    
T  2920023 aaaataatgcaaactatattaaaaataagaaataacattgtttgatacaatac-attacaatgaaaa 2919958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 6689130 - 6689200
Alignment:
Q  136 gacggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaa 206  Q
    |||||||||||| ||| || |||||  | ||||||||  || ||||| |||||||||||||||||||||||    
T  6689130 gacggatctagatatttgggatatgtttgactaaaattacaaagaaacaataatgcaaattatattaaaaa 6689200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 19267109 - 19267059
Alignment:
Q  183 aaataatgcaaattatattaaaaataagaattaacattgtttgatgtaata 233  Q
    |||||||| ||| ||||||||||||||||| ||||||| |||||| |||||    
T  19267109 aaataatgtaaactatattaaaaataagaaataacattatttgatataata 19267059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 30705270 - 30705316
Alignment:
Q  191 caaattatattaaaaataagaattaacattgtttgatgtaatacaat 237  Q
    ||||||||| |||||||||||| ||||||||||||||  ||||||||    
T  30705270 caaattatactaaaaataagaaataacattgtttgatacaatacaat 30705316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 14607867 - 14607795
Alignment:
Q  215 aacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataaca 288  Q
    |||||||||||||  |||||| ||||||| |||| | |||| |||||| |||||||||| | ||||||||||||    
T  14607867 aacattgtttgatacaataca-ttacaatgaaaattttctcctatccatttgttgaaaatgagctaaaataaca 14607795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 1111924 - 1112071
Alignment:
Q  139 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaatt 238  Q
    ||||||||||||||  |||||  ||  ||||||| |||  |||| ||||||||||| | |||||| |||||||| |||||||||||||||  ||||||||    
T  1111924 ggatctagacattcaatatatatgtggctaaaatttcaatgaaataataatgcaaact-tattaataataagaaataacattgtttgatgcgatacaatt 1112022  T
Q  239 acaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataac 287  Q
    ||||| |||| ||||||||||||| |||||||||| |  ||||||||||    
T  1112023 acaatcaaaattgtctcttatccatttgttgaaaatgatctaaaataac 1112071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 2158598 - 2158715
Alignment:
Q  182 aaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaa 281  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||  ||||| |||||||| ||||  ||||| |||||| |||||||||| | |||||    
T  2158598 aaaataatgcaaactatattaaaaataagaaataacattgtttgatacaatac-attacaatgaaaatcgtctcctatccatttgttgaaaatgagctaa 2158696  T
Q  282 aataacaatattgctaatt 300  Q
    ||||| |  ||||||||||    
T  2158697 aataatatcattgctaatt 2158715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 33517953 - 33518087
Alignment:
Q  138 cggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaat 237  Q
    |||||||||||||| |||||||||| |  |||||| | | ||||| |||||| |||||||||||||||||||||| ||| ||||||||||  ||||| ||    
T  33517953 cggatctagacattaggtatatgcggagttaaaattttaaagaaacaataatacaaattatattaaaaataagaaataatattgtttgatacaatac-at 33518051  T
Q  238 tacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    |||||| ||||  ||||  |||||| |||| |||||    
T  33518052 tacaatgaaaatcgtcttatatccatttgtcgaaaa 33518087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 2813941 - 2814062
Alignment:
Q  166 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaatt 265  Q
    ||||||| ||| ||||| ||||||||||| ||||||||||||| ||| ||| ||||||||||  ||||| |||||||| |||   ||||| |||||| ||    
T  2813941 ctaaaatttcaaagaaacaataatgcaaactatattaaaaatatgaaataaaattgtttgatacaatac-attacaatgaaagtcgtctcatatccattt 2814039  T
Q  266 gttgaaaacgtgctaaaataaca 288  Q
    |||||||| | ||||||||||||    
T  2814040 gttgaaaatgagctaaaataaca 2814062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 4377200 - 4377294
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaa 273  Q
    ||||| ||||||||||| ||||||||||||||||| ||| ||||||||||  ||||| |||||||| ||||  ||||  |||||| ||||||||||    
T  4377200 agaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatac-attacaatgaaaatcgtcttatatccatttgttgaaaa 4377294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 36247791 - 36247897
Alignment:
Q  178 agaaaaaataatgcaaattatatt-aaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgt 276  Q
    ||||| ||||||||||| |||||| ||||||||||||| | ||||||||||  ||||| |||||||| ||||  ||||| |||||| |||||||||| |     
T  36247791 agaaacaataatgcaaactatattaaaaaataagaattcatattgtttgatacaatac-attacaatgaaaatcgtctcatatccatttgttgaaaatga 36247889  T
Q  277 gctaaaat 284  Q
    ||||||||    
T  36247890 gctaaaat 36247897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 35390429 - 35390511
Alignment:
Q  166 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    ||||||| ||| |||||  || ||| |||||||| ||||||||| || ||||||||||||||| |||| ||||||||||||||    
T  35390429 ctaaaatttcaaagaaattatgatgtaaattatactaaaaataataaataacattgtttgatgcaataaaattacaataaaaa 35390511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 50723279 - 50723219
Alignment:
Q  187 aatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||| ||||    
T  50723279 aatgcaaactatattaaaaataagaaataacattgtttgatataatac-attacaatgaaaa 50723219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 30804379 - 30804435
Alignment:
Q  192 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    |||||||| ||||||||| || ||||||||||||||  |||||| ||||||||||||    
T  30804379 aaattatactaaaaataataaataacattgtttgattcaatacatttacaataaaaa 30804435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 46671916 - 46671978
Alignment:
Q  192 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtct 254  Q
    |||||||||||||||||| || ||| ||||||||||  |||||| ||| |||||||| |||||    
T  46671916 aaattatattaaaaataataaataatattgtttgattcaatacatttaaaataaaaattgtct 46671978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 17938868 - 17938940
Alignment:
Q  154 gtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttga 226  Q
    ||||||| || |||||||| | | | ||||||| | |||||||| |||||||||||||| ||| |||||||||    
T  17938868 gtatatgtgtgactaaaatttaaaaaaaaaaatgaagcaaattacattaaaaataagaaataatattgtttga 17938940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 23347781 - 23347902
Alignment:
Q  139 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaatt 238  Q
    |||||||| ||||||||||||| ||  ||||||| ||| | ||| ||||||||||| ||||||||| ||||||| ||||||||||||||| |||||  ||    
T  23347781 ggatctaggcattcggtatatgtgtggctaaaatttcaaataaacaataatgcaaactatattaaatataagaaataacattgtttgatgcaatacgctt 23347880  T
Q  239 acaataaaaactgtctcttatc 260  Q
    ||||| |||| ||||| |||||    
T  23347881 acaatgaaaattgtcttttatc 23347902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 9539748 - 9539648
Alignment:
Q  185 ataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaat 284  Q
    |||||||||| ||||||||||||| ||| |||||| |||||||  ||||| |||||||| ||||   ||||||||||| |||||||||| | ||||||||    
T  9539748 ataatgcaaactatattaaaaatatgaaataacatcgtttgatacaatac-attacaatgaaaatcatctcttatccatttgttgaaaatgagctaaaat 9539650  T
Q  285 aa 286  Q
    ||    
T  9539649 aa 9539648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 10781357 - 10781254
Alignment:
Q  180 aaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgct 279  Q
    |||||| |||||||| ||||||||||||||||| ||| ||||||||||  ||||| |||||||| ||||  ||||  |||| | |||||||||| |||||    
T  10781357 aaaaaaaaatgcaaactatattaaaaataagaaataatattgtttgatacaatac-attacaatgaaaatcgtcttatatctatttgttgaaaatgtgct 10781259  T
Q  280 aaaat 284  Q
    |||||    
T  10781258 aaaat 10781254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 8064950 - 8065065
Alignment:
Q  184 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaa 283  Q
    |||||| |||| ||||||||||||||||| | ||||||||||||  ||||| |||||||| ||||  ||||| |||||| | ||||| || | || ||||    
T  8064950 aataatacaaactatattaaaaataagaaattacattgtttgatacaatac-attacaatgaaaatcgtctcctatccattggttgagaatgagcgaaaa 8065048  T
Q  284 taacaatattgctaatt 300  Q
    | |||  ||||||||||    
T  8065049 tgacatcattgctaatt 8065065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 281178 - 281144
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  281178 agaaacaataatgcaaattatattaaaaataagaa 281144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 9516797 - 9516763
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  9516797 agaaacaataatgcaaattatattaaaaataagaa 9516763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 273
Target Start/End: Complemental strand, 27464439 - 27464306
Alignment:
Q  139 ggatctagacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaatt 238  Q
    ||||||||||||| |||| ||| |   ||||||| ||| | ||| || ||| |||| |||||| |||||||||| |||| |||||||||  ||||| ||     
T  27464439 ggatctagacatttggtacatgtgaggctaaaatttcaaataaacaacaatacaaactatatttaaaataagaaataacgttgtttgatacaatac-atc 27464341  T
Q  239 acaataaaaactgtctcttatccaattgttgaaaa 273  Q
    ||||| ||||| |||| ||||| | ||||||||||    
T  27464340 acaattaaaaccgtctattatctatttgttgaaaa 27464306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 43909407 - 43909373
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  43909407 agaaacaataatgcaaattatattaaaaataagaa 43909373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 35438931 - 35438898
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataaga 211  Q
    ||||| ||||||||||||||||||||||||||||    
T  35438931 agaaacaataatgcaaattatattaaaaataaga 35438898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 1405901 - 1405961
Alignment:
Q  166 ctaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttga 226  Q
    ||||||||||| ||||||||||||| ||| |||  ||||||||| || ||||||| |||||    
T  1405901 ctaaaatatcaaagaaaaaataatgtaaactatggtaaaaataaaaaataacattatttga 1405961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 9477805 - 9477837
Alignment:
Q  392 tagctgaaaaaacatgtttaacacttgcaattg 424  Q
    |||||||||||||| ||||||||||||||||||    
T  9477805 tagctgaaaaaacacgtttaacacttgcaattg 9477837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 29703120 - 29703064
Alignment:
Q  192 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    |||||||| ||||||||| || ||||||||||||||  |||||| ||| ||||||||    
T  29703120 aaattatactaaaaataataaataacattgtttgattcaatacatttaaaataaaaa 29703064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 25232916 - 25233020
Alignment:
Q  184 aataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaa 283  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||  |||| ||||||||| |||| |||||| |||||| |||||||||| | | |||||    
T  25232916 aataatgcaaactatatgaaaaataagaaataacattgtttgatacaatataattacaatgaaaattgtctcctatccatttgttgaaaatgagttaaaa 25233015  T
Q  284 taaca 288  Q
    |||||    
T  25233016 taaca 25233020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 303
Target Start/End: Original strand, 26787258 - 26787365
Alignment:
Q  196 tatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgc 295  Q
    ||||||||| ||||||| ||||||||||| ||| |||||||||||||| |||| ||| |||||| || |||||||||||| | |||||||| |  || ||    
T  26787258 tatattaaagataagaaataacattgtttaatgcaatacaattacaatcaaaattgtgtcttattcatttgttgaaaacgagataaaataatagcatcgc 26787357  T
Q  296 taattttt 303  Q
    ||||||||    
T  26787358 taattttt 26787365  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 39785484 - 39785583
Alignment:
Q  201 taaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataacaatattgctaatt 300  Q
    |||||||||||| ||||||||||||||| |||||||||||||| ||||  ||||  |||||| ||||| |||| | ||||||||||||| |||| |||||    
T  39785484 taaaaataagaaataacattgtttgatgcaatacaattacaatgaaaatcgtctactatccatttgttaaaaatgagctaaaataacaacattgataatt 39785583  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 426
Target Start/End: Original strand, 26787418 - 26787491
Alignment:
Q  355 cacttattttgttacata-ttgaatgttca-aacttttttagctgaaaaaacatgtttaacacttgcaattgat 426  Q
    |||||||||||||||||| |||| |||||| ||||||| ||| ||| |||||||||||||||||||||||||||    
T  26787418 cacttattttgttacataattgattgttcacaacttttgtagatgacaaaacatgtttaacacttgcaattgat 26787491  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 49143969 - 49144033
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaa 242  Q
    |||||||||||| |||| ||||||||||||||||| |||||||||||| || | |||||||||||    
T  49143969 agaaaaaataatacaaactatattaaaaataagaaataacattgtttggtgcattacaattacaa 49144033  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 30074772 - 30074676
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaat-aaaaact-gtctcttatccaattgttgaaaa 273  Q
    |||||| ||||||||||||||||||||||||||||  ||||| |||||||  ||||| |||||||| |||| || ||||| |||||| ||||||||||    
T  30074772 agaaaagataatgcaaattatattaaaaataagaaacaacatcgtttgatacaatac-attacaatcaaaatctcgtctcctatccatttgttgaaaa 30074676  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 26824559 - 26824472
Alignment:
Q  199 attaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataa 286  Q
    |||||||||||||| ||| ||| ||||||| |||||||||||||| ||||  ||||| |||| | |||||||||| | | ||||||||    
T  26824559 attaaaaataagaaataatattatttgatgcaatacaattacaatgaaaatcgtctcctatcgatttgttgaaaatgaggtaaaataa 26824472  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 16841114 - 16841052
Alignment:
Q  198 tattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatc 260  Q
    ||||||||||||||| ||| ||| ||||||| |||||||||||||| |||| |||||| ||||    
T  16841114 tattaaaaataagaaataatattttttgatgcaatacaattacaatgaaaattgtctcctatc 16841052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 40717004 - 40716946
Alignment:
Q  230 aatacaattacaataaaaactgtctcttatccaattgttgaaaacgtgctaaaataaca 288  Q
    ||||||||||||||||||| |||||| |||||| |||||||||| | | ||||||||||    
T  40717004 aatacaattacaataaaaattgtctcatatccatttgttgaaaatgaggtaaaataaca 40716946  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 34346960 - 34346903
Alignment:
Q  167 taaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgttt 224  Q
    |||||| ||| ||||| ||||||||||| || |||||||||||||| |||||||||||    
T  34346960 taaaatttcaaagaaacaataatgcaaactacattaaaaataagaaataacattgttt 34346903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 2945519 - 2945416
Alignment:
Q  198 tattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa-ct-gtctcttatccaattgttgaaaacgtgctaaaataacaatattgc 295  Q
    ||||||||||||||| ||||||||||||||  ||||| ||||||||||||| || ||||| |||| | |||||||||| |  ||||||| |||  |||||    
T  2945519 tattaaaaataagaaataacattgtttgatacaatac-attacaataaaaatctcgtctcctatctatttgttgaaaatgacctaaaatgacatcattgc 2945421  T
Q  296 taatt 300  Q
    |||||    
T  2945420 taatt 2945416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 13094692 - 13094632
Alignment:
Q  188 atgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    |||||||||| | |||||||||||| |||||||||| |||| || ||||||||||| ||||    
T  13094692 atgcaaattaaactaaaaataagaaataacattgttagatgcaacacaattacaattaaaa 13094632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 32221975 - 32221932
Alignment:
Q  182 aaaataatgcaaattatattaaaaataagaattaacattgtttg 225  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||    
T  32221975 aaaataatgtatattatattaaaaataagaaataacattgtttg 32221932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 33941763 - 33941720
Alignment:
Q  184 aataatgcaaattatattaaaaataagaattaacattgtttgat 227  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||    
T  33941763 aataatacaaactatattaaaaataagaaataacattgtttgat 33941720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 7899448 - 7899482
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  7899448 agaaacaataatgcaaattatattaaaaataagaa 7899482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 26050128 - 26050162
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  26050128 agaaacaataatgcaaattatattaaaaataagaa 26050162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 26059487 - 26059521
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaa 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  26059487 agaaacaataatgcaaattatattaaaaataagaa 26059521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 33255068 - 33255012
Alignment:
Q  192 aaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaa 248  Q
    |||||||| ||||||||| || ||||||||||||||  |||||| ||| ||||||||    
T  33255068 aaattatactaaaaataataaataacattgtttgattcaatacatttaaaataaaaa 33255012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 46090370 - 46090290
Alignment:
Q  145 agacattcggtatatgcgtaactaaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttg 225  Q
    ||||||| | |||||| |||||||| ||  || ||||| ||| || |||| |||||||||||||| || ||||||||||||    
T  46090370 agacatttgatatatgtgtaactaatattacaaagaaacaatgatacaaactatattaaaaataaaaaataacattgtttg 46090290  T

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Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 461469 - 461348
Alignment:
Q  178 agaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtctcttatccaattgttgaaaacgtg 277  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||| |  ||||| |||||||| ||||  ||||| |||| | |||||||||| | |    
T  461469 agaaataataatgcaaactatattaaaaataagaagtaacattgtttggtacaatac-attacaatgaaaatcgtctcctatctatttgttgaaaatgag 461371  T
Q  278 ctaaaataacaatattgctaatt 300  Q
    ||||||| |||  ||||||||||    
T  461370 ctaaaatgacatcattgctaatt 461348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 9625 - 9712
Alignment:
Q  167 taaaatatcagagaaaaaataatgcaaattatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaactgtct 254  Q
    |||||| ||| |||||||||||||||||  ||||||||||||  || ||||| ||||||||| | | ||||||||||||||| |||||    
T  9625 taaaatttcaaagaaaaaataatgcaaacaatattaaaaatataaaataacaatgtttgatgcagtgcaattacaataaaaattgtct 9712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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